GgaEX6037017 @ galGal3
Exon Skipping
Gene
ENSGALG00000006050 | F1NB14_CHICK
Description
NA
Coordinates
chr5:11501199-11506234:-
Coord C1 exon
chr5:11505974-11506234
Coord A exon
chr5:11503447-11503588
Coord C2 exon
chr5:11501199-11501831
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTTGGGTTAAAGATT
3' ss Score
5.08
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCAGGAGGAAGCGGCGCGATGGGGCCGGCGGCGGGGGACGCGGAGCCGGAGGCAGCGGCGGGGGGCGGTCCCTGGCTGCTGCTGGCGCTGCCGCCGCTGCTGCTGCTGTTCGCGCTGGTGGTTCGGCAGCTGTTGAAGCAGCGGCGGCCGCCCGGCTTCCCGCCCGGCCCCGCGGGGCTGCCCCTCATCGGCAACATCCACTCCCTGGGCGCGGAGCAGCCGCACGTCTACATGCGGCGCCAGAGCCAGATCCACGGGCAG
Seq A exon
ATTTTCAGCCTTGATTTGGGAGGTATATCTGCTATTGTGCTGAATGGCTATGATGCAGTGAAAGAATGCCTTGTTCACCAAAGCGAAATTTTTGCAGACAGACCATCTTTTCCTTTGTTTAAGAAGCTGACAAACATGGGAG
Seq C2 exon
GCTTACTAAACAGCAAATATGGCAGAGGATGGACAGAACATCGCAAATTAGCTGTGAACACCTTTCGAACTTTTGGATATGGTCAAAGGTCCTTTGAACACAAAATTTCAGAAGAATCTGTGTTTTTCCTCGATGCCATTGATACCTACAAAGGCAGACCATTTGATCTTAAGCACTTGATAACAAATGCTGTTTCAAACATTACTAATTTGATTATTTTTGGAGAACGTTTTACATATGAAGATACTGAATTTCAGCACATGATTGAGATTTTCAGTGAAAATATTGAATTAGCTGCTAGTGCCTCTGTATTTTTATATAATGCTTTTCCTTGGATTGGTATCTTGCCATTTGGGAAACACCAGCAGCTGTTTAAAAATGCAGCTGAAGTCTATGACTTTCTTCATAAGCTTATAGAACGAGTCTCTGAAAATAGGAAATCCCAGTCACCTCGACACTTTATAGATGCATACTTAGATGAGATGGATTGCAACAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006050-'2-2,'2-1,4-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(7.2=37.9)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(46.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCGGCAACATCCACTCC
R:
TCAAATGGTCTGCCTTTGTAGGT
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]