DreEX0025459 @ danRer10
Exon Skipping
Gene
ENSDARG00000056587 | cyp2r1
Description
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-110114-1]
Coordinates
chr7:27420454-27424420:+
Coord C1 exon
chr7:27420454-27420693
Coord A exon
chr7:27421937-27422078
Coord C2 exon
chr7:27423926-27424420
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATTGCCATTTTATTTCCCAGATT
3' ss Score
8.57
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGATATCGATCAAACGCTTAACATCACCGCTCTCCTTGTCCTGGGAGCAGACGCTGATATGTTTGCTCGGTTTGTTCACGACACTCTTGATTCTGCTGGTGATTCGCCAGCTCGTAAAGCAGCGGAGACCCCGAGGGTTTCCCCCCGGACCGACACCTTTGCCCATTATAGGGAATATGCTTTCCCTCGCCACAGAGCCTCACGTCTACATGAAGAGGCAGAGTGACATCCACGGACAG
Seq A exon
ATTTTCAGTCTAGACCTGGGAGGAATCCCGACTGTGATTCTAAATGGTTATGATGCCATTAAAGAGTGCCTGTATCACCAAAGTGAGGTTTTTGCAGACCGCCCGTCCCTCCCTTTATTCCAGAAGATGACAAAAATGGGAG
Seq C2 exon
GACTTCTGAACTGCAAATACGGCCGAGGCTGGATTGAGCACCACAAACTGGCTGTGAACTGCTTCCGCTACTTTGGCACTGGCCAGCGGATGTTTGAGAGGATTTCTGAAGAGTGCCTATATTTTCTTGATGCCATTGACCAGCACCAAGGCAAGCCCTTTAACCCCAAGCATCTGGTGACCAATGCGGTGTCCAATATCACCAACCTCATCATCTTTGGCCAGCGCTTCACCTATGACGATGGGGATTTTCAGCACATGATTGAGATCTTCAGTGAGAATGTGGAGCTGGCAGCCAGCAGTTGGGCTTTCCTGTACAACGCCTTCCCCTGGATGGAGTACCTGCCCTTTGGGAAGCACCAGAGGCTGTTCCGCAATGCCAACGAGGTCTATAAGTTCCTCCTGCAAATCATCAGGCGCTTCTCGCAGGGCAGGGTTCCCCAGTCGCCGCAACATTACATTGATGCCTACTTGGACGAAATGGAGCAAAGCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056587-'13-15,'13-14,14-15
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(7.0=40.0)
A:
PF0006717=p450=FE(10.4=100)
C2:
PF0006717=p450=PD(71.9=98.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTCGGTTTGTTCACGACA
R:
GGAAGCAGTTCACAGCCAGTT
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]