RnoEX0025928 @ rn6
Exon Skipping
Gene
ENSRNOG00000011367 | Cyp2r1
Description
cytochrome P450, family 2, subfamily r, polypeptide 1 [Source:RGD Symbol;Acc:1311866]
Coordinates
chr1:184096597-184106200:-
Coord C1 exon
chr1:184105990-184106200
Coord A exon
chr1:184100151-184100292
Coord C2 exon
chr1:184096597-184097229
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTTTCTTCCCAAAGATT
3' ss Score
8.26
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
CGGAGTCCAGACGTGCGCTGGGGCGCTCGCGGGCGCTTTCCTTCTGCTACTACTCGTGCTGGTGGTCCGCCAGCTCCTGAGGCAGAGACGTCCAGCGGGCTTCCCCCCGGGTCCTCCGCGGCTGCCATTCATCGGCAACATCTGCTCCCTGGCCCTGTCGGCCGATCTTCCCCACGTCTACATGAGGAAGCAGAGCCGGGTGTTTGGCGAG
Seq A exon
ATTTTCAGTTTAGATCTTGGAGGCATATCAACTGTGGTTCTCAATGGCTATGATGTAGTAAAGGAATGCCTTGTTCATCAAAGTGAAATTTTTGCAGATAGACCATGCCTTCCTTTGTTCATGAAGATGACAAAAATGGGAG
Seq C2 exon
GCTTACTCAATTCCAGATATGGCAGAGGATGGATTGATCACAGAAGATTGGCTGTTAACAGCTTTCATTATTTTGGAAGTGGCCAAAAATCTTTTGAATCTAAAATCTTAGAAGAAACTTGGTCTTTAATTGATGCTATTGAAACATACAAAGGTAGACCTTTTGACCTCAAGCAACTGATAACAAATGCTGTTTCAAACATAACTAACCTTATCCTTTTTGGAGAACGATTCACTTATGAAGACACTGATTTTCAGCACATGATTGAGTTATTCAGTGAGAATGTCGAACTAGCTGCCAGTGCTCCGGTCTTCCTTTACAATGCATTTCCATGGATTGGCATCTTACCTTTCGGAAAACATCAAAGGCTATTTAGAAATGCAGATGTGGTCTATGATTTCCTCTCCAAACTTATTGAAAAAGCTGCAGTAAATAGAAAGCCTCATTTGCCTCAGAATTTTGTTGATGCCTATTTAGATGAGATGGATAAAGGTCAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011367-'0-2,'0-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(2.1=90.0)
A:
PF0006717=p450=FE(10.9=100)
C2:
PF0006717=p450=FE(48.7=100)
Main Skipping Isoform:
ENSRNOT00000067609fB3820
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTACTCGTGCTGGTGGTCC
R:
TGGCCACTTCCAAAATAATGAAAGC
Band lengths:
249-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]