RnoINT0044409 @ rn6
Intron Retention
Gene
ENSRNOG00000011367 | Cyp2r1
Description
cytochrome P450, family 2, subfamily r, polypeptide 1 [Source:RGD Symbol;Acc:1311866]
Coordinates
chr1:184100151-184106200:-
Coord C1 exon
chr1:184105990-184106200
Coord A exon
chr1:184100293-184105989
Coord C2 exon
chr1:184100151-184100292
Length
5697 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TGTTGTTTTTCTTCCCAAAGATT
3' ss Score
8.26
Exon sequences
Seq C1 exon
CGGAGTCCAGACGTGCGCTGGGGCGCTCGCGGGCGCTTTCCTTCTGCTACTACTCGTGCTGGTGGTCCGCCAGCTCCTGAGGCAGAGACGTCCAGCGGGCTTCCCCCCGGGTCCTCCGCGGCTGCCATTCATCGGCAACATCTGCTCCCTGGCCCTGTCGGCCGATCTTCCCCACGTCTACATGAGGAAGCAGAGCCGGGTGTTTGGCGAG
Seq A exon
GTAGGCCTCGACGCGGACCTTCCTCTCGTCAGAAGCAGCAACCAGGGACCCCATGGCCCTGTCACCACTCAAGGGAAGCCCGCTTCAAGGGCTGTGCCTCCAACCGGAAGCCGCCTCACTAATACCACACCAGAGGCGCTTTGGCTTGAGTTTCCCGCCCACAGACCAGCATGTGCTTCTGCGCTTGCGCTGTGTGGCCTGTACGCTGCCCTTATGCTGCCACTGACAAACTTCTCAGTCCTATGGGCTATGAGCTTATGGGAAAATAAAGGCGTTGTGAGTTTCTAGGACAGCTAATGGTTAGTATTGTAGTGGTTTAAACCGGTTTTTAAAAGATTTAACACCAAAAATAAAAATTGCCCTTTGACTTTCTGAACCCTAAGTTTTACTCATCAGGATAATTAGAATGATACCCAAAAGCAGTAAGAAGCTACCCAAATGTATTGCCTATTATATATGATTTTGGTTACTATGTGAGAAAAGTACCATTTAGCAGTGTTAGGAGTTGACCATAGGGTTTGGCTAGGTAAATGTTCTATCACTGAAACACACAGCCAGTAAAATAGAAATGTATTATGCCTACAAATTTAAAATTATCTTTAAACCAGATGATTTGAAATGGTTTCTCATTGAATAGGAAATTAAAATTTTTATACATAGATCTTTGAACTGAATTATTTACCATGAATATTCATATAGGACAAATAATGTAAGTCTATTTCATTAAGCTAAAATTAAAATGTAAGTGTATGGAAGACTGTGATTAAGGAATAGCTTGATTGGATTCAATTGATTAGAACTTGGGGTAAGTAATTTTGTTTCTCGTACACTGAGGAAACTATGCATTGTTTACAATGATGACCATTTACTGCATATCAAATAAGACTGACTGTGCCGATAGCTTCAAATTTGTAAGGAGCAAAACTGAAAAGTATATATGCATTACAGAGTAAATATTGTATTTCGACTTGATAACTACCAAACATTGACTCTAAATTACTGTTGCATTTGATCTTTATTCTAGCTATCAAACAACCCTGAAGATTTCCCATTGTCTTAGAGATACTTCACAATTCTGACAGTTTCAAAATTAGTATAAGTTGTTAAAATACTACATTTTTTGTAGACTAGACTATAAGGAGACTGTTATTTCCTGTACATCAGAAAGTTATAGGAAGCAGTTCATAGGAGTTATTTTTCTGTTATCTCCCTTTTTAATTTGAGATGTGTAGTCAAATAAGAGTAAATAAAACTGAACTCTAAAATAACTTCTACTTTTGTGCGCTCTTAGTTTAATTCTTTATAATTTTCTGAAGGAAAACAGCAGTGCCTATGATTCATACTTATTTTTAAGCAATCTTATATAGGAATGTGCAGCAGCATAAATTGCCATTTCTTTGGAGAATCATTCTTGATTGTTTTAGCTTCCGCTATGATTAGATTCTTAATGTAGATTTTGAGCAGCATTCCACAGCTAGCAAAATTGATATAAATGTATTTGTCAGACTCTTTCAGGTAATACTCTTAAAGGCAATAAAGATAAGATAATTATTTTGCATTACAGCAAACAGAATTGACAGTTTATTCATTTGTCTTATGGAAAACTTTTATTGAGACCTTATTCAAGGCATTGAGTAGGGTTCTGTGGAGAATTTAAGAATGAAAAGAAGTATTTTTTAAAAGTATTTATACTTTTAGGTTCAAACTAGTATCAAGTTAATGTTGGCTCAGCATAAAGGGAATAAAATGTATGTATTTAAAAAAAACTACATAGAACAAGGTCTCTAAAGACTTGATACAGTTTGGATAGGATGATAATCAAGGGAGGCATTCCAGATGAGAAAACAGACCAAGAGGTTGAAAATGTAACAGTCACTTGACATCAGTAACATTATGTAGATGTGTTTGTTGTTAGTACTTAGTCAGTGGTGTTATAATAATATTCTTAAATGTGTTTCTGCCAAAATTCGTTAATTCAGCACAATGCATCAATTGTTTTCTTATGCCATGAACTGCCATGTGTGCTACAATTTCGTAGTGAACAAAATAGAGATCTCCCTCTCTAGGTAGCATCCATTCTATTTGGGGAAAGGCAGACAAAATAAGTATAAGTAATATATATTAGAGCTGTATGGGGTACAACAGAAGCTAAACTAGAGTGATGGAAATGGGCACTACTGTAGGGATGAATTTTTAGTAAGTCAGAGCAGCCTCATTGCAATGACATCTTAAAAGGAGACAAAAGAGCAGTCCAGAACATCATCTTAGGGAAAAACACACCTTAAAAAGAGCAAACACCAAGGGCATGAAGCAACATTGTGCCATGTTGAGCATTATCTATAAAGACAAGAGTAAAATTAGGCCAGTAAGGAGGTGGTTGTGATATCTGTTATAAGGGTGAAAAGCAAGTGGCTTGAACCCCAGTATGGAGGTTTTGAAAACCAGCTCTGCATTGCTGAAACAAAATAATTGAGATAATAAACTTATGAAAAGGAAAGGTTTATTGTGGATTCTATCTTGCATGTTTTAGCCGGTTGGTTGACCTCATTGATTCTGGAACTGTTGTGAAACAGTGTATCATAGTGGCAGTGTGTGGCAAAGGAAACTGCTTACACCTTGGCAGCCAAGAAGACAAGAGCCAGCAGACAAGCATATATACCCTGTAAAGGGCATAGCCATAGCTTGAACCTCTCATTAGGCCCTTTAAAATTTCTGCGTTTTTCCCTGTAACACTAAGCTAAACTCTGTATCTTTAATATATAAGCGTTGGAGGGATATTTAAGGTCTGAAGTAATAAGAAATTGGTCAAATTCTTTTATAATTTCAGAGTAGAAACAGTGTGCATCTGAGCAGCTGAATGTCTCTTGTGACCAAGCATTTCACAGCAGCAACTTAAGAGAGGAAGGGTGCATTTGGGCTTATGGTGCAGAAGATACAGTTTAACAGGGCAATTAGTGTTTCAGTTTCTGGGCTCAGGAGTTTGCAGTGGCTCCTCACTTTATACTAATTAGGAAGCAGAGACAACTTGACTGGAATCAGGGCCAGGAGATGACCCTCGTGGCCATGTTCCAGGAACTCACTACCTCCAATTAACCCCACTTCCTAAAGGTTCTATTATCTCCCAAAACAGTGTCGGCAGATGAGGACAAAGTGTCCAACCACAAGTCTGCAGGGGAACATTTCACATTGAAACAGGACCCGAACATCTTGGAGGATAAATAGTGTGGTTGTTAACTGACATAGTAAAATTTTCTCTGCAAAGCTAGTTTGGGTGGAGAATTTTTTCAAAGATCACTCAGCAACAAATGTTTGATGGATTTCTGTTTGCATCTCTGCTAAAGTTATCTCATAACAGACATTTAAAAACTGTTCAATAGATCAAAGATTGACTACACCTATTATTGGACCCTTCCATAGATCAAAACAGTTTAAGAGTAAGTTTTCACAGTTTGATTGATGAGACTTTACTAAAAATTCTTGAGTATAATATTCAATTAGATCAAGTAAAATTTCCCCAAATTATACTCTCTTAACAAATGACTATCTCGATTTCTTGAGTAAAGATTATATAATACCTTTCTGCAGTGATGAGTCCTTTTTTAAAATAATCCCTACTAACCATAGTGTGAAGATTTTCTTTGAAATATATTCTTCTGTTCTGCCTTCATATTAACATACTTTCAGCAAAAATGTCCCGCACCATTTTTGCAAAATGATTAATTTAGGTTTTTCCTGCATTGGTACTACTTCCTATAAATTTTACTGAATGCATTTCTGGGAAAAGACTTTTCTTTAACAACAGTAGTAGTGCTTTGAGTACTGAAAGACTTCTCATTTGCTTACCTGGTAACAATTCCCTTTGTGCTAAAACCACCTCCAGGGCCACTGAGAACTAATGCTACTGTACAAAAATCTACATTTTCCCCAAGATTCTAAATGTATATACTTCTCTGTTCCAGGGTCCACCCTTGTGCTAATAACTACGGTGCGACTTGATTATATTTCCTCTTGATATTTGTCACTTTTTCTGACCTACTCCTGAAGAACTTTTTTCATCAGCTAAGACTTCCTGTTTTCTTATGAGGCAAAATGTACATGATTAAATCTGCCTTAGTTGTTTGCACAAAGATAAGGCTCTTCCCTATATTTTATCTGTAAGAAGCTCAATTCCTGAGAGTGATAAGCATTCTTTGGGACTTACTGATATGTAGGCTTTTCATGGGTTAGACCTTTACAGGAGCTTAGCTAAAATACAACTCAAGAGGAGTGACTTTGTAAATGAACCTGGGTTGACCACATGGTGTCTTGGCTAGTTTTGTTGTTAACGTGACCCAACCTAGAGTCACCTGGGAAAAGGGGACCTCAATTGAAGAATTGTCTCAATCAGTTTATCCCAGGGTATCAAAAGAGATTGTCTTGATTGATGATTAATATGGGAGAGCTCAGTATGCTGTGGGTAGGGCACAGTCCCTAGTGTGCTACTCACAATCATTTGAGAAGAGGGGACCTCAATTAAGAAAAAGCTCCCACCAGATTGGCCCGTGGGCCAGCCTGTGGTACATTTTCTTGATTGAGGATTGATGTGAGAGGACTCAGCTCACTGTGGGCAGTGCCACCCAGGGTTGGTACTATAAGAATGCACGTAGAACGAGCCATGAAGTCCAAGCCAGAAGCAACAGTCCTCTGTAACCTCTGTATCAGTTCCTGCCTCTGAGATCCTGCCCTGATGGCATTCCTGCTCTGATTTTCTTTAATGATGTGGTGCGGGAGTAAAACATGAAATAAACTTTTTCCTTTCCAAGTTGCTTCTAGTTATGGTGTTTTATTACAGCAATGGAAACCCATCTAAGAAACCAGTAATGTCTGTGTGTCCTGAACAACAAAGCTAAGAGATAGAGCCAGAGAATGAGCCAATAAGCAATTCCTCCATGGTTGTTTCCAGATTTCTGCCCTGACTTACATCTTGATGGACTGTGATCTGGAAGCGTAAGCTGAAATGAACCATTTTCTCCCCTAAGTTGTTTTTGGTCATGGTGTTTATCGCAGCATAAAACATCAAACTTGAACATGGGCAAAAAACTCCAGTAAGGGATAGGATGGATTGTTCTACTTTCTTTTTCCCTTGGCTGAAAGATACCTACCTATGTGTATCATTCCTCTAAAGTTAGGTTCCCTTAGGACCTGGGATTTAGAAAGGCAAATACAATCGACATATGCTTAAACTTCAAAGTTGTCTTGGATTTCTCAGTCCTCTCCCTTCACTTCAAGCTGGTATAATAATAGATAGATGGTGTTAGTCGTTCATTTGTCTTGGAAGTAAAATGAGATTTCTACATAATGAATATTTGGAGATGGGGTGAATCCTAATAGAGTATGTAAGTCAAATATATTTTTGTGGCAATACCAAAGTCTAAAAAGCATATTTTGTCTATCACGTTTGAGCTATTTAATGGCAAACCTTAAAGTAGAATACAGGCCTCCTATGTCCAGTACTCCTTTCATTACACCTTATAAGATGATTCCAGGCTTGGGGTGTTATATTTAATCATGCTGTCTAAACATTGTCAAGTAACAAATCCTTATGTTTTTAGAGAAGTAACAAATATTAGAAGGGATAGGCTCACATGTGGATTCTATGGTGTTTCCTCTGTACATTTTGCTTTCAAACAAATTTGAATGTTGTTTTTCTTCCCAAAG
Seq C2 exon
ATTTTCAGTTTAGATCTTGGAGGCATATCAACTGTGGTTCTCAATGGCTATGATGTAGTAAAGGAATGCCTTGTTCATCAAAGTGAAATTTTTGCAGATAGACCATGCCTTCCTTTGTTCATGAAGATGACAAAAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011367:ENSRNOT00000067609:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(2.1=90.0)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]