BtaINT0046204 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010419 | CYP2R1
Description
Bos taurus cytochrome P450, family 2, subfamily R, polypeptide 1 (CYP2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076267]
Coordinates
chr15:38420926-38429307:+
Coord C1 exon
chr15:38420926-38421177
Coord A exon
chr15:38421178-38429165
Coord C2 exon
chr15:38429166-38429307
Length
7988 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
TTTTTCTTTTCTTCTCAAAGATC
3' ss Score
8.95
Exon sequences
Seq C1 exon
GCGGGTTTGCAGCCCCCGCCCCAGGCCATGTGGGAGCCTCACAGCGCCGAGGCGTTCGTGGCAGCCCTCGGCGGGGTCTTCTTCCTGCTTCTCTTCGCCCTGGGGGTCCGCCAGCTGCTGAAGCAGAGACGGCCGTCGGGCTTCCCCCCGGGACCGTCGGGGCTGCCATTTATCGGCAACATCTACTCACTGGCCGCCTCGGCCGAACTCCCCCATGTCTACATGAAAAAACAGAGCCAGGTGTACGGCGAG
Seq A exon
GTACAGCCGACGGAGGGCCCGCGCCTTCCTCCCCGGGGTAGGGGATGGGGGTGGGAGTCCGATGCTCGTGGTTGCCAGTTGTCGGGACCCTGCTCCGTGTGCGCGCAGCGTGGGAGCAAGCCCGCTTCCTGTGCCAAGGGACAAGGTCCTCAGGCGGCGCCACTGCCGGGGGCTGGGGAAAGGAGAGCCCTGCCCATCCGTGAGCCCCGCCCACACCGACGCCCGCGGAATCTGGGCGGGATTGTCCCGCCCGCGAGGGCGAAGAGGTGCCGCTCCCGCGCATGTGCAGTGGGACCCTGGACCCGCGCCGGACGCCCCGTCGGGCGTCACAGGCGCCGACTTCAACGTTCGTTCCACGCGCCCGGCTTCTCGGGTTCACGGAACCTCACGCCGCGCGCGTAGGTTAGCGTCCCCTTACGGCTTCTGGGGATTTTCAGGGTTGAGTTAATGGTTAATAGGAGGTCTTTGGGTATTTGCATTTGAGAACGGCTGGTCTAGGCGTCTGCTGTGAGGAGGAGCGCAGGTGAAGGACTGTGAAAGAGCGAATGAATTAATGAGTGAAATCAGTGCGGTGTCCCACTGCTGTGCTGTCTACCTGGAGATAGGAGCGCCCTCGCAGCAAACACGGAGCCTCCCTTGCAGTGTGACCTCTCCAGGGCAGGTCTTCTAGTACTTTTTTTCGGCGGGGGAAATTTTGGCGCAGACCTGCTGAGTGACTTGTAGGGTTGCTGCACAGCTGCCAAAAGCAAGAGAAAGGCCAGAGTCCTAGCTTGCCTTGGGAAGAGTGTTCTAACGTGGAGGAGGCAGAAGTTTCCAGAAAACGCCTTGACCCAGCTCAGTTGATTTGTTTTAAATCCTTTCCTTTATAGGAAGCTACTAGCCAGACTCTGATAGGTTCTGTGATGAAGAGGTGAAGAAGGCAGTGTCAACATAAAAAAATGCCTGATGTGAGAGTTGGGAGTTAAATTTTATTTGGGGGCAAAATGAGGACTGCAGCCTGGGAGACAGCACCTCAGATAGCTCTGAGAAGCTGTTCCAGAGGCAATGGGGTAAGGCCGATATTTATGTGACTTTGGTGAAGGGGTTGTTCATGTAATCTGGGCACATATTTTTGCAGAAGGTTTTAGTAGTTGTGAGGAGAGGATGTCACCATGAATGAATTGAGTGCTTTTCTAGAAATGAAGAGATGTTAGAATTGGGTTCATAAATTCAGCTTCTGAAAATAGCAACCTATCTGAAGACCTGTTCTGCCAGTTTTTTGGAATGGAGTGCCTCCTTCCTGGTCTCCATCCTGACTGCCTTCAGGGCATAGTGAAGGTCAGCAGGTGCAACAGCACTTGATGTAGAGGTAGATGGCAAGTGCCAATTGGAAGTAGTTGACAGCAGTCACAGCCTGATTTTAGGTAGTTACAGTCCAGTGAGAGAGAAGCATTAATGATCAACCACAAATTGTGTGTGTTGTGAAAAAACAGGACTGTTGGGCAGTTGTGGCATTCAGGTTTGGGGTTACATTCATATTTAAACCAGTTTTTACAAGAATTATTCGAAGTTTCTGCAGTTCACTAATGGTCTCTATCACTATAGGAAGGCTGGACTTAAAGCAAATATATATAATTCTTAGATTTTATTTTCCATCCTCCAGTTCGTGAGTGTATTTGCATGGTTTTCATCAAATGTATTTGATTTCTGGTGTGTTGGTATGAAGTATCATCAGTATTACAGAGAAATCAGAAGATGTGAAAGAACAAGACCAGAGGTTGAGTCCTCTTTCAAAAAAGGTCAACATTTCTTAGGTTCTAGTTGATGTGGTGGTTGAACACTTCAGGCTAATGTTTACCATTTAAAGAGAACTGGGATTTTTTTTTACAGCTGATGCATTATCTTTGCTATTGTTACTTGTTTTGCATGATAAATCATTTGTTCTTTTATTCCCTTAAGATTAATTACTGAGACCTTGTACAAGGGCAAGTATCATACTCAGGCTTAGATCCCCAGATGGCTTAGGCAGAAAATGACTTCTCTTAAGAAAGCCATTCCTGGTTCTTTCTTTCTGGGGAACCCCTATCCCATCTGATGATAAACAATAGAATATATGAATGTGTTGGAAGATTGTCATCTTGGGATAGGTAGCTCTGGTTTAATGGATTTGTGGCACGAATTACCAGTTTTTTTGCTAGTACAACTATTTAAGGCAGCCATGGATCTTTACAGGCTTTCCTGATAGCTTAGTTGGTAAAGAATCCGCCTGCAATGCAGGAGACCTCGGTTCGATTCCTGGGTCAGGAAGATCCCCTGGAGAAGGGATAGGCTACCCAATCCAGTGTTCTTGGGCTTCCCTTGTGACTCAACAGGTAAAGAATCTGCCTGCAACGTGGGAGACCTGGGTTCGATCCCTGGGTTGGGAAGATCTCCTGGAGAAGGGAAAGGCTACCCACTGCAGTATTCTGGCCTGAAGGGTTCCATGGACAGTATTGTCCATGGGGTTGCAAAGAGTCGGACACAACTGAGCAACTTTCATTTCCACTTTGGATCTTTACAAAGTGGTCTTTTTACTTAAGGTGGTAAAATCAAATAGGACTAACTGTGTTATTATATCCAAGAGTGGAGGGAGAAGAAAATGCAGAAATTGAAAGGATGTATGCATTGAAGAGTAGACATTGTTTGAATAAGTCTATTTTAGACTTAAGTTGAAAACCACCTAAAGTATTAACCCTTTAATCTGATTGTTCTTTATCTTAGTTGTGAAACACCCCTACAGGTCTCTCATTGTCTTAGAGATATTTTCCAATTATGACAAAGTCTCAGAGTTGGTTTGAGTTTTTAATGTACTATACTTTTCTTGGAAGCGGAAGGAAACTATTATCTTCTATACTTCTAGAAGGTTGTGGAAAGTTTATATGTCTTATAAATAGAATCTTATTTTTCTACTATGTTTCATGATGATCTGGAGATGTGTGCTCAGAGAAAGTCATGGACTTTAAAATTGCTTATGAGAAGTGACAATCACTTCAAGTGACAACTACTTTTATGAAGTCTGTGAATTCAATTCTCCTTCGTAATTCTTGAAAGGAAGACAGCCAGTCTTCAAGTCTTATACAGTCATTTTAAAGACATTCTTATATAGAAGTGTACCACACTGAGACTTAACATTACCTTAGAGATCCATCCTGAATGTGTAAGCTTCTGCAGTGACTAATCTTAACCCAGATTTCAGAAGCATTCCCTAGCTAGCAAAACTAGTATGAGGGGTTTTAACAGATTATTTTCAGGTAATGCACATAAGGATAATAAAGTAATTACTTTGAGGCAAGTGGAGTTGACAACCTATAATTTATTTATACAGTAAGCATTTATTGAGATTTATGCAAGGCATTGAATGAGATTTTATGGAGTGTTCGAAGATGAAAGGGATGAAATCACTGAATCAAAAGAGTTTATAATTTAGCCAACAAGCAGAAGATAAGCATTCATATAATGCTTCTGGTTTTTTGTGCCAGTGCTATGTTGCTTCAGTCGTGTCTGACTCTTTGTCTGTAACCCATTGTAACCCACCAGACTCCTCTGTCCATGGCATTTACCAGGGAAAAATACTGGAGTGGGTTGCCATTTCCTACTCCAGGGGATCTTCCTGACCCAGGGAGTGAACCTGTGTCTCCTGCATTGGCAGGCAGGTTCTTTTCCATTAGCGCCACCTTTGGTAGTATTGAATTAAGTGCCATGGGAGCTTTTAAGCATGTGCTGTGGTGGTTCAAGGGAAAAAGAGAATGCACCAAGAAAGGCTTCATGGTGGTTGGTCCCTAAAGACTTGGTGGTTTGGACAGTATGGCAGTCAAGGGGGGCATTCCAAATGAGAATACAGCCCAAGCAAATGTTGAAAAGTATATGGCAATTACCAGTTTTTATCAAAGGACTTTTTACATTCCTCTGTTATTAGCACTTAGTCTATAGTGTTGTAAAATATGCTTAAATGTGTTTCTCCACCACTTTTCTTTAATTCAACATATATTTATCAGTTGTTAGCATATGCTATGTACTATCCTAATTGTGGAGATTTAGCAATGAACAAAACAAGTGGAAATCCCTGCTCTTGTGTGGTTTATATTATAGTGATGGAAGGGAGGCAGTGAGCAGGACAGGAACAATGTAAACACAGTAAGTATATAACATGTTAGAGTATAAAGTATAAAATAACTAAATTAGGGTAAGGAAGATGAAGAATACTAGGGGGTGAAATTTTAATGGGTTAGAGCAGGCCTCACTGCAAAAAAGGCATCTGAGAAAATACTGCAAGGAAGTGAAGTAGCAGGCTATGGGAATATCTAGGGGAAGAACATTCCAGGCCAAGGGAACAAGTACTAAGGCCTTGAAGCAGAAATATGCCATGTTGAGAGTCACCTGTAAAGAGACAAGAGGCAATTGAGATCATATAGAGGAGAAATGAAAGATTAGAGTGATGAAGATTACACTAAATGAAAGATTAGTGATGAAGCTGGTAAGAAACTGTCATATTTTGTCTGTATTGTTAAGTTGAAACATCATGACGGCTGAGAAGTGATGTGGGGCTTGGGTGAAAAATGGAGTCAACATGGCCAGCTCAGGACTTCCCTGGCTGTCCAGGGGTGAAGAATCTGTACTTCCTCTGCAGAGGGTGCAGATTCAATCTGTAATCAGGGAACTATGATCCAGCATGCTGTATAGTGTGGCTAAAAGAAAAAAAAAAAATCCAAAACAACAAACACCATGGGCAGTTTGGGACCTGAATATAGTTTAGGACATCTACCTGGTGTCCCAGAATTACGTGATATATGGAAAATCACACATCTGGTGTTGTAAGTATTGAGTGCTGAAAGTTGAGGAGGCACACAGGAGGAGGATTTTTTCTTTGTATTTACTTAAAATTATGCTTCTGGGAAAAGACTTTAAGACCATCCCCTTACTGCTTTGCAAACTGAAAAGAGCCCCTCCTTTGCTCAGCTGATAATCACTTCCTTTGTACTGAAACTCTCACACTGCCGCTATTGACATACCATTGCTTATGGCAGTCAGTCCACGACTCTTCCCCAAAGTTCCGGGTGTACCTTCTGCTCCGTTAGCAGGGTACATCCTTGTGCCAAAAACTCTTTTGCTCAGTTTGTTGATTCTGTTGCTACTTGGAGGTCTTTATCACTTTTTCTTCTGTAAATACTTCTGTTGAACTTCAGTTCTCTGCTAAGCCTCCATCCCACCCCCCCAAAATTGTGTGAATCATGGCCAAAATCCATTCTGCCTGTTTGCACAAAAATGAGGCTTGACTCAGTATTTTTGGCACTCAAAAACCTTCAGCTAGGGACTTCCATGGTGGTCCAGGGATTGAGAATCCGCTTTCCAATGCAGGGGACATGGGTTTGATCCCTGGTTGGGGAACTAAGATACTGCAGGATAACTACTGCAACAGGAGAAAGCCTGGATGCTGCAGCAAAGAGCCCTGTACACAGCGATGAACAGGGCTATATGGCCAAATTTTTTTTTTTTTTTAAGTTCTCAGCCAGTGCCTGAGAGGATGAGGTTAAGCAATCATTGCATCTCACTGATAAGGTAGCACTGTTCCTTCACTGGATTAGGCCCCTATGTGGGGCTAACTAGAATAGAGTACCGGAGGTATGACATTTTAAGGGAACCTGTAGTGAAGCATGTGAGAAACTACAACAAGGAACAGGATGGATATTCCATCTTTTAGCTCAGAGGCAGCCACCTATACCAAAGTGGCAAATGCCTATACTCCAAGGTCAGATACCCTTAGGGCCCTCTGTTAACTTCATGGCATTCAGGGGCCTAAATAAATAAACCAGTGAGTTTCAGTATGTTTTGTTGAGGAAGGGGAAATTTTCCCCTCTGCCCCTCTTGAGTTCTTATGGCTGGACTAAGAATAGAATTGACACAAGACAGAGTAACAGGAGAGAAAGAAACACATTAGAATTCATGCGCATGGAGGTCTCGTAGAAATGGGATGGAGGAAATGACGAAAGCAGGCAGATTTTATATTTTTTAGATAAAGAACCAATAAATTTGCAAAGAATTGACAGGACAAGAAAAACTTTGGTTTTGGGTGCCCAATTAGTGAAGAATCTAAACAGGTCTTGTGATTGGGCAGTAAATTAAAGAAATAACAAGATTTGTTTAAAAAATGCTTCTCAGCCCCAAATTCCCTGTCTTTGGTAATCGGCAATAAGGAGTCCTAGGGTGATGAAAGTGAAAGTGGAGGGTGAAAAAGTTGGCTTAAAGCTCCACATTGAGAAAACGAAGATCATGGCATCTGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAAACTTTATTTTTGGGGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGATGCTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGATAGCATATTCAAAAGCAGAGACATTACTTTGCCAAGAAAGGTTTGTCTAGTCTATGGTTTTTCCTGTGGTCATGTATGGATTTGAGAGTTGGACTGTGAAGAAGGCTGAGTGCCGAAGAATTGATGCTTTTGAAGTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAACCCTGAGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGTGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTTGGGGGAATTGGGGGCAGGAGGAGAAGGGGATGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCAATGGACGTGAGTCTGAGTGAACTCCGGGAGTTGGTGATGGATAGGGAGGCCTGGCGTGCTGCGATTCGTGGGGTCACAAAGAGTCAGACACGACTGAGCGACTGAACTGAACTGAACTGAGGGCTTCCCTGGTGGCTCAGGTGGTAAAGAATCTGCCTGCAATGCAGGAGACCCAGGTTCAATCCCTGGGTCGGGAAGATCCCTGGAGAAGAAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATTCCATGGACAAAGGAGCCTGGTGGGCTACAGTCTGTGGGGCCATAAAGAGCTGGGACATGACTGAGCAACTAACACCAGCACAACAACCTCCATATGCAGAGAGTACACCTTTCACATGAGAGATTTATTTCCTACTTTCAGGGAGATAAAAAGAGAGAGGTGTCCCTCATTTTTATTTATTTTTATTTTGGCTTGCAGGATCTCAGTTCCCTGCCAGGGATCACACCCAGGCCACAGCAATGGCAGTTCCAAGACCTAACCAGTAGGCCACAAGCGAACTCCCTAGAGTATCCTTTTTGTGTTGGCCATTTCTTCATTAACTTTTAATTCAAAATAATTAATGTGCCATTGAGGCATATTTTGGGATTACATATCCCAGGCCCCAGCAAAAGTTGTCTTCAGTTTCAAGTCTCTTGGGCCTTCGACAATCCCCTCCCCTACCTAAACCTAGAATAATAAATGATATATAGATGGAGTCACCTCCTCAATTTTTCTTGGAAATAAACAGAGGTTCTGAGAGATCATTGACTGTTTTGAGTTGGAATGAATTTTAAAAGCGCATATAACTCAAGTATTTCTTGATTTTCTATAGCAGCCCCGAAGCCCAAAAACATTAAGGGTTCTATCCAGTGACCTATATCTGTTTAATGGCAAAGCTTAAAGTATAACCCAGACCTCCTCAATCTGGTACTGTTTGCATTACAGCATTTACAAGATTATGTCTTCAGTCATTGAATGTGTAATGAAATCATTGTGCTTGATAGGCACTCTAAACAGTCAACTTGGTAATAAATGCCAGTATTTTCAAGAAATAACAAATACTGAGAGAGCTGGACTTAGTACATGTAGATTTCTCTGGTTATATTTCTCAATATATTTTTCCATTTAAATGTTTTTCTTTTCTTCTCAAAG
Seq C2 exon
ATCTTCAGTTTGGATCTTGGAGGTATATCAGCTGTGGTTCTAAATGGCTATGATGTAGTAAAGGAATGCCTTGTTCATCAAAGTGAAATTTTTGCAGACAGACCATGTCTTCCTTTATTCATGAAGATGACAAAAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010419:ENSBTAT00000039972:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(7.6=41.7)
A:
NA
C2:
PF0006717=p450=FE(55.3=100),PF0006717=p450=PU(6.8=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development