HsaINT0044319 @ hg19
Intron Retention
Gene
ENSG00000186104 | CYP2R1
Description
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:HGNC Symbol;Acc:20580]
Coordinates
chr11:14907322-14913751:-
Coord C1 exon
chr11:14913527-14913751
Coord A exon
chr11:14907464-14913526
Coord C2 exon
chr11:14907322-14907463
Length
6063 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
TTTTTCTTCTCTTCTCAAAGATC
3' ss Score
8.8
Exon sequences
Seq C1 exon
ATGTGGAAGCTTTGGAGAGCTGAAGAGGGCGCGGCGGCGCTCGGCGGCGCGCTCTTCCTGCTGCTCTTCGCGCTAGGGGTCCGCCAGCTGCTGAAGCAGAGGCGGCCGATGGGCTTCCCCCCGGGGCCGCCGGGGCTGCCATTTATCGGCAACATCTATTCCCTGGCAGCCTCATCCGAGCTTCCCCATGTCTACATGAGAAAGCAGAGCCAGGTGTACGGAGAG
Seq A exon
GTACAGCCCCGACGGGCCCCGGGCAGGGAGGGCCGCCAGGCTGGCCCGGGCTGGCCAGGGCCTTCCTGGTTGGACTTATGGCCGCCCCTGGGCCGACTAGTCGGGACCTCTCCGTGTGCCGGCTGCCCTTTGAGGGACACCCGCTTCCCGGGTCTGGAAGGGAGAAGTCCTCGACGCCGTGCCCCCTTGCAGGGGGAGCCCCGCCCCTGCCGGTGACCCACTCCGGGCCGAGGCTCCGAGGCGATCCAGTCCTGATTTTCCCGCTACCGCTCGAGCTCTTGCTCCTGCGCCTGCGCCGTTTGGCTCGCCAGCCGCGCCGCCACTTCAGGTCCAGGGTGGACGCATGCCCTCAGGTGCGGGCGTCTTGCGAGTCGGCCTCGCAGCTCTGTGGAAGCTGCACGCGGCTTGTCGGAAAATCAAGGCGTTCTGAGTTCTAGATGGTTAATAGCAGGTTCTTCGGTGTCTGCAGTCGACGAACGACTGGTGTAGGCGTTTGCTGTGAGAATGGAGAATGCAGGGGAACGCCCCTGACTGAGAAGCGGGCCCTGGGAAACGATTGTGAACGCGTGAATGAATTGATGACTAAAATCCGCTGCGGGGGTCCTACAGCGCAGATGGTAATGCCGTTCTGACTGGCTGGGAACGGCACCTTAGCAGATACTTAAAAGGCGCCTTCTGTGTGCCACTGTCACTGCCAACTTGGTGACTCATTTAAAACTCATAACCAGCCGGTGAGGTCGGTACTTCGCTCCTCCTCATTCTGCGGAGGGGAAAGCAGCACGGAAATGCCCTGTGACTGGCAGCGGAAAAGGCGACCACCGCTTGTGTGTGGGTGTCCCGACGTCCGGAGGGGGCAGGAGTTTCCACGGGTCCTGGGACAGAGCTCACCTGTTTTGTTTTGAATTACACTTATTTATATGCAACTACAGGCCTGACGCTAGCGGTGAAGAAGGCAGATACAGCCTTTTAAGGAGTTGGCAGATGAGTGGGAGAGAGAAAACTAATCTCATTATCGGCCACAGGCTGTGGTCAGTGTTTTGAAGGAAAAGTACAGGGATGTTTGGCAACTGTGGTATTTCAGGTTTGACCTTAAATCCTTACTTAAACCAATTTTTACAAGGATTGGTCTAGGTGCCCGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTAGGAGGCCGAGGCGGGCGGATCACGAAATCAGGAGATCGAGACCGTCGTGGCTAACACGGTGAAACCCCATCTCTACTAAAAGAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCACCTGTAGTCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTTCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCCAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTGGTCTAGGTTTCTAGAATAGAAAGTCACTAATGGTTTACGTTCCTTTCATGGTTCACGAATAGTTTACGTTGTTAAAGGGAAGCTGGACGAGATAATAAAGGTATGTATAATTCTTAGATCTTATTTTCCAACCTGCAATTCTCCCAGAATTGAGTTTATTCCCATGATTTTCATGTAATATATTTCATCTCTTTGGTATCTTGGTACACAGCATCATAATATTCTAGAGAAATAAAATGTGAAAGCATAAGACTAGAGGTCAGGTCTTCTGCCAGACAAAACTTGACCTCTATTCTGAGTCTTTTTTTTTTCTCGGTAGTGAGAATAACAACAGAAAACAGAAAAGTGCTACTCAAGTGTTCTTGGTTATTGTGTATGTTATTAGTTTCTTTCTTTTTTTATTTGAGACGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGACGCCATCTCGGCTCACTGAAAGCTCCGCCTCCCGAGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACCACAGGTGCTCGCCACCACGCCCGGCTAATTTTTTGTAATTTTTAGTAGAGATGGGCATTCACTCGGTTAGGCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCCGGCCTATGTTATTAGTTTCTATACACAGAACACATTTGTTCGACCTCCAAATTTGAAAGTATTTTTAAACAAGTTATTTGAAATGGTTTCTCACAGAAAAAGGAATTAAGCTTTTCTTATATAAATATTTGAACTGAAAGACACTCGGTATTACTATGAATATTTCTTTTGGGCAGGGGGTTTTCTAAGTCCCCTATCATAGTTTTATTGCTGGTACCACTGTTTGAGGGAACCATGGTTCTTTACAGAGAGAGCTCTTGACTACAAATGAAATAGGGCCAAACTGTTACTAGCTGCAATGGGGCAGAGGAAAAACTGAAAGGAGCAAAAATGAAAAAGAATGTATGCATCAAAGAGTAGACATTGTTTGCCTCACTATGCCTTAGATCTAGTTGATAACCACCAAACATATTAACTCTAGGCTACAGCGGCATTTGATCTTTATCCTGGTATGAAACATCTCTAAAGATCTCCCATTATCTTAGAGATATTTTCCAATTCTGACAAAGTCTCAAAGTTGGCATAAATTGTTAAAATACTATACCTTTTTTTGGAGGTTGAAGAATATTGTTCCCTCCTGTGCTTCCAAAAAGTTCTGGAAAGTTGTACCTAGGACTTAAATAAAATCTTAGTTTTCCACTGTCTTTTAAATTTGAGATGTATGCTCACAGAAAAAAAAAAAAAAACAACTGGACTTTAAAATTGCTTAGGACAGTCACTTCAAGTGACACCCGCCTTTGTGTTAGTCTGTGAATTCAATTCTGCTTTGTGATTCTTGAAAGTTAAACAGCCAGTCCTCAGGACTTATATATTCATTTTAAAGGCAATCTTAAATAGAAGTGTATCACACTGAAAATTACCATTTCCTTGGAGATTGATTCTGAATGTTTAAATTTCTGCAGTAACTTTAATCTTAGTCTAGATTTCAAGAGGCATTCCCTGGCTAGGAAAGCCAATACAAGTGGCTTTATCGATTATTTTCAGGTAATGGACTTCAGGACAATAAAATAATTCCATTAAAGCAAGTAGAATTGACAGCGTATTAATTTATTTTTACAGCATTTATTGAGAACTTTATGCACAGCACTGAATGAGATTCTGTGTAAGGATTCAAAGATGAAAAAGATGAAATCACTGCTCCTAAGGAGTTTGTAATTTAGCATGCAGGCAGAAGACAAGAATATGAATGTTTCTGGTTCAAGATAGTGTTAAATAAGTGCCATGGGAGCTTCTAAGCTCCCATGTGTGGTTCAAAGCAGAGAGAAAAAGAGTGCCCCAAGAAAGGCATCATGGAGGATGGTCCCTAAAGACTTGGTATGGTTAGGGTAGTATGGCAGTCAAAGGAAGCCTTCCAAATGAGGAAACAAACCAAGCAAAGGTTGAAAAGTGTGGCAGTCACTTAATGGTTTTCATCAACAGCACTTTGCACATTTGTCTGTTATTAGCATTTAGCCCATGATGTTATAATAATATGTTTAAATGTATGTCTCTATGACTATTCATTAATTCAACATATATTTCTATTGTCATATGCTGTGCACTGTCCTAGGTGCTAGAGATATAGCAGTGACCAAAACAGATTCCTGCCCTTATGTAGCTTATATTCTAGTTGGGGGAAGACAGACAATATAAACACAAGTAAATTATATAATATATTCAAAGAGTACAGAGTAGGAAGTAAACTAAATTAGGGTAAGGGAATGGAGAATGTTAGTGGGTCAGATTTTAAATTGCTTAATCAGAACAGGTCTCACCACAAAGATAGCATCTGAACAAAGACAAAGGAAATGAAGGAGCAAGCTATAGGAATATCAAAAGGAAGAACATTCTAGACTAAGAAAAGAGCAAGAACAAAGGCCATAAAGCAAGAGAATGCCACGTTGAGAATTACCTGTAAAAAGACAAGGATGAAATTAGGGAGGCCAGTTAGGAGGTTGTTGTTATAAGGGAGAAATGCAGGTGACTTAGACCGGTCACCTGCAGGTTATAATAAATTGTCTGATTCTGTTTATATTCTGAAGGTAGAAACAGCATAACTGCTGAGCAGTTGGATGTGGAGTTTGGAAGAAGATAATGAGTCAGTGTGGGTGACTGCAAAGTCCTGGGCCTCAACCACTTGAAGGATGTATGGAGTGGTCATTAACTGGGAGAGTGAAAAATTATGAGTAGGGCTGGTTTGGGTGAGGGAAAGAGACTTGAAGATCATGGAGTGATCTAGAAGGCAAGGAAAATGTTTTGTGTATTCCTGTTTACATCTCTGCCAGCATTATAATTAGCCCATAATTGGCACTAAAATTATTGAATAAATCAAAGAATATATAAGCTAATCTTGTACCCTTCCATAGATCAAAGCAGTTTAAGGATAAGTTTTCACAATTTGAGTCACACACCTTTACCAAAAGTCCTTGAAAACTGTATACAGGAATACATACTAGTTCAAGTAAAAATTTCTCCAGTTCTACCCTCAAATAGAGGACTATTTCAGATTCTTGAGTAAAGGTGGATTGTGTAACAACTTTCTCAAGCCATGGCTCCTCCTTGCTTTTTATGATCCCTGGTGTCCACAATTTGAAGCTCTACCCTGAAGCTCTATCCTGAAATACATTTGCCCTCTGTTCTGCCTTCATAGTGACACAACTTTAAGTTCATGGCTCTTTTACTATCCTTGTGGAATGGCATCTTTTTATTGTCTCTGCTAAAGTTCCCTTCTGCGAAGAGACTTTCCTTTAATAGGACTACATTACTGCATTGTCCCCACTTTGCTCGGCTGGTAGCCATTCCCTTTTACTTAGAACTCTTCTACTGTCACTTTTGACTAATACCACTGCTTATGGCAGGCAGTCCATGTTCTTTTCCCAAGGTTCTGGATATACCTAGTGCTCACTTGGCAGAGCCCACCCGTGTGCCAAAGACTCTGGTGGCCCCATTACTCAGCTGGTTAGTTGTTACCACTTGGCAGTCCTCATGACCTTTGCTGATATAACTTTCTGCTGAACTTTTGTTCTCTGCTAAGCCTCCTGTTTTCTTCTGAAGTAGTGTGTACCATGGCTAAATCTCCTTGACTTGTTTGCACAGGGATAAGGCTTGTCTCAGTATTTTGGCTGTAAAATGCTATCCTGAAAGGATGGCAATAAGCAATCTTTACATTCCACTGATAAGGGAATATCGTTCTCTCACTGACTGGCCTCTTATATTGGGTTAACTAGAATAGACTACAGGAGGTGTGACATTGTAAGTGAACCTGGGGTGAGGCACAGGGCAGACAACTCCAGCAAGGCATGGAATGGATCCTGTTTTGCCTTCCCCTTAACTGAGAGGCAGCCACCTAACCTATGTGGTAAATGCCTTTCCTCCAAGGTTAGGTTCCCTTAGAGCCCTCTTCATTCACTTTGTGGAATACAGAGAGCCAAATACAAATGGGCTTAGTTACAATATGTTTATACTTCAAAGTTGTCTCTCAGGTATTTGACAATCCTCTCCCTCACTAGCCTCATTCATCTTGGAAATAGAAGGAGATTCCTAGATATCATTGAACATTTTGAGGTAAAATGAATCATAAAAGAGCATATATATCAAATATATTTTCTATGGCAATACTGAAGCCCAGATAGGTTAAGTGTTCTGCTCAGAGTCTTTTATCTGTTTAATGGCAAACCTTAAACTAGACCCAGGCCTCCCGAGTCCAGTACCCTTTTCATTATACTGTTGGTAAGACTGTGACTTTAGGCACTGAATGGCATAATGAAATCACACAGTTTTGCATGCCTTATAGAAGGAGGGCACTCTGAACATTGTCAGTTGAGTAATAACTGCCTATATTTTCAGGGACGTAACAAATCCTGGAAGAGCCGCACTTACCACTTGTAGATTTCCATGGTTATATTTCTCCATACATGCTGTCATTTAAATGTTGTTTTTCTTCTCTTCTCAAAG
Seq C2 exon
ATCTTCAGTTTAGATCTTGGAGGCATATCAACTGTGGTTCTAAATGGCTATGATGTAGTAAAGGAATGCCTTGTTCATCAAAGCGAAATTTTTGCAGACAGACCATGCCTTCCTTTATTCATGAAGATGACAAAAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186104-CYP2R1:NM_024514:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(76.1=46.7)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)