GgaINT0051458 @ galGal3
Intron Retention
Gene
ENSGALG00000006050 | F1NB14_CHICK
Description
NA
Coordinates
chr5:11503447-11506234:-
Coord C1 exon
chr5:11505974-11506234
Coord A exon
chr5:11503589-11505973
Coord C2 exon
chr5:11503447-11503588
Length
2385 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
TGTTTTTTTTTGGGTTAAAGATT
3' ss Score
5.08
Exon sequences
Seq C1 exon
GCAGGAGGAAGCGGCGCGATGGGGCCGGCGGCGGGGGACGCGGAGCCGGAGGCAGCGGCGGGGGGCGGTCCCTGGCTGCTGCTGGCGCTGCCGCCGCTGCTGCTGCTGTTCGCGCTGGTGGTTCGGCAGCTGTTGAAGCAGCGGCGGCCGCCCGGCTTCCCGCCCGGCCCCGCGGGGCTGCCCCTCATCGGCAACATCCACTCCCTGGGCGCGGAGCAGCCGCACGTCTACATGCGGCGCCAGAGCCAGATCCACGGGCAG
Seq A exon
GTACCGGGCGGGCGCCGGCTCCGACGCCGAGCCGAGGCAGGCGGCGGGCGGAGCGGGGGAACGGCCCTGCCGCTATCGGGCGGGACGGCGCGGGGGGCCCCGCTCGGGGGTGCCGCGGCTCCGGCGCTGAGCGTCGGGCGAAACGCGTGCTACGGACGGCCCGGCCCCGGCAGAGAGCGGCTCCGCTCCCGTGCGCGCCGGAGCTCCGTTTCGGGGCGGCGGTGTGCCCCGAGCATCCGTCTGCCCCGCATTCGTGGGGCTTCGCCTGAGGCAGAGCGCGCAGGAAACCAAAGGGCAGGCATGGGCATAGTGCAGCACCGTCACGGGAAGAGCTTTGCATTAAAGTGCCTTCAGAATGATATTTGAGTAGTTACTGATAGTCGATTTACATATATATATGGGAATGTTTTGATGGCTTTTTTTCTTTTCGTGTTTTCTTGTTTCTCGTCTGTTTCTTTTCATTATCCCGTTTCACGGCAGCAGTCTATTCTTACACGCTTCGAAAAAGTGAAGCCCAAGCTATCAGTGTGGGCTCGGAAAGGCAGGCAGAGCAGACGCAGCACGTGTAGGTGTGCGCCTGACTCCACCTCCCCCGTATCGCCTCGGGCTTTTCCTTGGATTCCCAACCGATGGAAAGACAGAGCTTTGAGTCCAACAAACAGTGGCTTGGATAGAAAATCACATCCCCCAAACTGTTAAGAGTTGTTTAAGGGGTTAAGAGGTGTGTAAATAACACCTTGAACAAGCAAATGAAAGAATACCGGTGATGGCACATAAGTCTTTCAAAAAGCTTTTGTAAAGGTAGTTATGAAAGCTACAAAAGAAACTCTACAGTCATAGTCTTATGAATGGGAAGCAAAATGTATGAATGGAAAGTGTGCTCAATGGCAGAAGTGTAAGGGTAGGGTTATCTCTTCCTCTCTTTCTCTTTATTTTGGCAGTTGATAAAAGGGGTTTCAAGGAAAATATTGGAATGAACTGAATGGAAATAGGATGGCAAATGTATCGTTCAAAATTAAGCTTTATACTTGCCTGAATGCTGACTGCAGTTCTCTTCACGTGCTGTCACCAAGGATTCTGCAGAATTTGGGCTGGATCAGGAGGCAGACCAGGATAGTGGGGAGCTCTGGAAGAGATCAAGGGAGTGATCTTTTTAAAAGTATTTCACAGCATACAAAGAATGATAAATAGGCTGTGATTGAAGTACACAAAAATAAATGCTTCCAAGAGGTACAGCGGTATTCTTCTCATCATGTAAAAAAAGAGCAGTTACAACAGTGAAAAATTTAGGCTTGCTTAAAGGAAATAGACTTCATAGAACGTGTAACTACTGCCCATTACTTCTTCATACAGTGATGGTCAGCAGTGCTGCAATGAAGAAAAAATAAAGATTTGTGAATAATGCAGTGAAAAATACCAGATTTATTAAGCTAATGAAAGTATGAAAAGGGACACAGAATTTCAGTCTTGGGAATTTAGCCTCTTTTTTTTTTTTTTTTTTTTTTTAAAGCTTAGGAGAAGATTTTCATTGTGTTTATCCTGTATGTGCCTTCTGCAGGCTGCACTGCGCCTTTCTCCAAAGCATGTAGTGCTGAGCACTTCTGGAAACAGGAGATGGGACCAGCTGGGCTATGCTATCATTTGTTGCCCGTCATCACGGCTCTCACATCTGTCATCTGATGGGTCTTTGGGAGTCTGTGCAAAGTAAGCTGGCGCCCAGTTTCAGAGAGAGGAAGGACTAGGTGCACCTTGGCTGTCTTCCACCACTGACACCACTTCTATGTCTGCCATCACTAAGTGATGGAAGTTTTTATCATAAAACTTGTAGCTTTGATCACAGTGCCCTGAACCAAATTCAACTACTGGATTCTTTTTTACTCAGGAAGAAAGGAGCAACAGATAGCAGTGAAACTTCCCTCCTTTCTTTGTTTCAATATGAAAGTACATAATACAAGTACTTTAGCTCTTCTATAAATAATATACCTTTCATCTATTTGCATTAGGAGAAAAAATGCATTAGGAGAAAAAACTTTTTTTTTTTAATGACTATATGAAAGCATTCCCTTATCCTTCCTTTGGAGGTTTGGTCACATTAGCTGCACTGCAAAGCAGAATGTAGCATAGGCTAACTTACTGTGTCATTTGGCAGAGATTAATTTAGCCCACAACAAAGTCTATGATGCCACAGTTGTGTCAATACTTGAGAACCCTCCTGTTTCTTGCATGCCCCATTGAAATTTATTGCTGTATTTATGAAATCTGTATTTTGCATTGAAGTTTAGTGTTATGTCACTTTTTCATCAGTTGTGTTTACTCGTTTTCATTATTTTTTTAAGGGATTTGGTTCTAACAGCATTTTATAATTTGTTTTTTTTTGGGTTAAAG
Seq C2 exon
ATTTTCAGCCTTGATTTGGGAGGTATATCTGCTATTGTGCTGAATGGCTATGATGCAGTGAAAGAATGCCTTGTTCACCAAAGCGAAATTTTTGCAGACAGACCATCTTTTCCTTTGTTTAAGAAGCTGACAAACATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006050:ENSGALT00000009745:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(7.2=37.9)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]