GgaINT0051458 @ galGal4
Intron Retention
Gene
ENSGALG00000006050 | CYP2R1
Description
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20580]
Coordinates
chr5:9969953-9973139:-
Coord C1 exon
chr5:9972480-9973139
Coord A exon
chr5:9970095-9972479
Coord C2 exon
chr5:9969953-9970094
Length
2385 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
TGTTTTTTTTTCCCTTAAAGATT
3' ss Score
9.8
Exon sequences
Seq C1 exon
ATGTCCTCCAGCAGACATCAGGTCCCTGCCGGCTCCGCGCCGACGGTGCCCACCGCCCACCAGCGGAGCCCCATCGGGCGGGCACACTCCCCGTCTCGTGGCCAGAAGGGAGGGGGAGAAAAGAAAGAAACACGGCAGGGTTGTCTGCTTGCAGTCTCCCAGACCCGAGAAGGCTGCGGGAAAGACATCCCCAAAAGTGCGTATTTCTGCTTTTTCTGTTTTTCCAGGACTACGAACGAAGGTATTTTTAATCAGGCGGCACAAGCTTCTCAGCTCTTCACCAGCACAGCCCCGGCCCGCCCCGGCCCGCTGACGCGAGGGGCGGCGCTCCCGTGGACCGATCGACGCGGGGCGGCTCTGCCAGCGCCCAACGGGGGGGCGGCGGGACGGGGCCGGGCGGCAGGAGGAAGCGGCGCGATGGGGCCGGCGGCGGGGGACGCGGAGCCGGAGGCAGCGGCGGGGGGCGGTCCCTGGCTGCTGCTGGCGCTGCCGCCGCTGCTGCTGCTGTTCGCGCTGGTGGTTCGGCAGCTGTTGAAGCAGCGGCGGCCGCCCGGCTTCCCGCCCGGCCCCGCGGGGCTGCCCCTCATCGGCAACATCCACTCCCTGGGCGCGGAGCAGCCGCACGTCTACATGCGGCGCCAGAGCCAGATCCACGGGCAG
Seq A exon
GTACCGGGCGGGCGCCGGCTCCGACGCCGAGCCGAGGCAGGCGGCGGGCGGAGCGGGGGAACGGCCCTGCCGCTATCGGGCGGGACGGCGCGGGGGGCCCCGCTCGGGGGTGCCGCGGCTCCGGCGCTGAGCGTCGGGCGAAACGCGTGCTACGGACGGCCCGGCCCCGGCAGAGAGCGGCTCCGCTCCCGTGCGCGCCGGAGCTCCGTTTCGGGGCGGCGGTGTGCCCCGAGCATCCGTCTGCCCCGCATTCGTGGGGCTTCGCCTGAGGCAGAGCGCGCAGGAAACCAAAGGGCAGGCATGGGCATAGTGCAGCACCGTCACGGGAAGAGCTTTGCATTAAAGTGCCTTCAGAATGATATTTGAGTAGTTACTGATAGTCGATTTACATATATATATGGGAATGTTTTGATGGCTTTTTTTCTTTTCGTGTTTTCTTGTTTCTCGTCTGTTTCTTTTCATTATCCCGTTTCACGGCAGCAGTCTATTCTTACACGCTTCGAAAAAGTGAAGCCCAAGCTATCAGTGTGGGCTCGGAAAGGCAGGCAGAGCAGACGCAGCACGTGTAGGTGTGCGCCTGACTCCACCTCCCCCGTATCGCCTCGGGCTTTTCCTTGGATTCCCAACCGATGGAAAGACAGAGCTTTGAGTCCAACAAACAGTGGCTTGGATAGAAAATCACATCCCCCAAACTGTTAAGAGTTGTTTAAGGGGTTAAGAGGTGTGTAAATAACACCTTGAACAAGCAAATGAAAGAATACCGGTGATGGCACATAAGTCTTTCAAAAAGCTTTTGTAAAGGTAGTTATGAAAGCTACAAAAGAAACTCTACAGTCATAGTCTTATGAATGGGAAGCAAAATGTATGAATGGAAAGTGTGCTCAATGGCAGAAGTGTAAGGGTAGGGTTATCTCTTCCTCTCTTTCTCTTTATTTTGGCAGTTGATAAAAGGGGTTTCAAGGAAAATATTGGAATGAACTGAATGGAAATAGGATGGCAAATGTATCGTTCAAAATTAAGCTTTATACTTGCCTGAATGCTGACTGCAGTTCTCTTCACGTGCTGTCACCAAGGATTCTGCAGAATTTGGGCTGGATCAGGAGGCAGACCAGGATAGTGGGGAGCTCTGGAAGAGATCAAGGGAGTGATCTTTTTAAAAGTATTTCACAGCATACAAAGAATGATAAATAGGCTGTGATTGAAGTACACAAAAATAAATGCTTCCAAGAGGTACAGCGGTATTCTTCTCATCATGTAAAAAAAGAGCAGTTACAACAGTGAAAAATTTAGGCTTGCTTAAAGGAAATAGACTTCATAGAACGTGTAACTACTGCCCATTACTTCTTCATACAGTGATGGTCAGCAGTGCTGCAATGAAGAAAAAATAAAGATTTGTGAATAATGCAGTGAAAAATACCAGATTTATTAAGCTAATGAAAGTATGAAAAGGGACACAGAATTTCAGTCTTGGGAATTTAGCCTCTTTTTTTTTTTTTTTTTTTTTTTAAAGCTTAGGAGAAGATTTTCATTGTGTTTATCCTGTATGTGCCTTCTGCAGGCTGCACTGCGCCTTTCTCCAAAGCATGTAGTGCTGAGCACTTCTGGAAACAGGAGATGGGACCAGCTGGGCTATGCTATCATTTGTTGCCCGTCATCACGGCTCTCACATCTGTCATCTGATGGGTCTTTGGGAGTCTGTGCAAAGTAAGCTGGCGCCCAGTTTCAGAGAGAGGAAGGACTAGGTGCACCTTGGCTGTCTTCCACCACTGACACCACTTCTATGTCTGCCATCACTAAGTGATGGAAGTTTTTATCATAAAACTTGTAGCTTTGATCACAGTGCCCTGAACCAAATTCAACTACTGGATTCTTTTTTACTCAGGAAGAAAGGAGCAACAGATAGCAGTGAAACTTCCCTCCTTTCTTTGTTTCAATATGAAAGTACATAATACAAGTACTTTAGCTCTTCTATAAATAATATACCTTTCATCTATTTGCATTAGGAGAAAAAATGCATTAGGAGAAAAAACTTTTTTTTTTTAATGACTATATGAAAGCATTCCCTTATCCTTCCTTTGGAGGTTTGGTCACATTAGCTGCACTGCAAAGCAGAATGTAGCATAGGCTAACTTACTGTGTCATTTGGCAGAGATTAATTTAGCCCACAACAAAGTCTATGATGCCACAGTTGTGTCAATACTTGAGAACCCTCCTGTTTCTTGCATGCCCCATTGAAATTTATTGCTGTATTTATGAAATCTGTATTTTGCATTGAAGTTTAGTGTTATGTCACTTTTTCATCAGTTGTGTTTACTCGTTTTCATTATTTCTTTGTAAGATTTGGTTCTAACAGCATTTTATAATTTGTTTTTTTTTCCCTTAAAG
Seq C2 exon
ATTTTCAGCCTTGATTTGGGAGGTATATCTGCTATTGTGCTGAATGGCTATGATGCAGTGAAAGAATGCCTTGTTCACCAAAGCGAAATTTTTGCAGACAGACCATCTCTTCCTTTGTTTAAGAAGCTGACAAACATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006050:ENSGALT00000009745:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(7.2=15.0)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]