DreINT0054285 @ danRer10
Intron Retention
Gene
ENSDARG00000056587 | cyp2r1
Description
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-110114-1]
Coordinates
chr7:27420454-27422078:+
Coord C1 exon
chr7:27420454-27420693
Coord A exon
chr7:27420694-27421936
Coord C2 exon
chr7:27421937-27422078
Length
1243 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
ATTGCCATTTTATTTCCCAGATT
3' ss Score
8.57
Exon sequences
Seq C1 exon
ATGATATCGATCAAACGCTTAACATCACCGCTCTCCTTGTCCTGGGAGCAGACGCTGATATGTTTGCTCGGTTTGTTCACGACACTCTTGATTCTGCTGGTGATTCGCCAGCTCGTAAAGCAGCGGAGACCCCGAGGGTTTCCCCCCGGACCGACACCTTTGCCCATTATAGGGAATATGCTTTCCCTCGCCACAGAGCCTCACGTCTACATGAAGAGGCAGAGTGACATCCACGGACAG
Seq A exon
GTACAGTAATATAATAATTAGATATTCAGAAATACAGTTGACTTGTTGAGTTTCTTGCTTTTAACGTTATACATTTTTTTGTGCGCGCGGCCGTCAGTTAGGCTTTGCTTCTTTAAAAAGTTATTTTTAGTAATCACGTGATGATAATTATTATTTTGCATAGCAGTGTAATGCATCTTGTAATATAGCCTAATCAATGAAGAGGTATACTTTGCGGCGCGTCGCGTTTAGATTAAGTCTGACGCGCTGCACAGCTGTTCTGCATCACTGTCCCCCTAGGGGGAATTATATATAGCTATGGAAAAAATAGATTTTATTTAAAAATATAATAATAATTTATTAGTTATTTTCATGCAAAGTTACTCCAGCAGACAACAGTTTTATTTTAAAGTCGGGAAAATGCAGAAGTAGCTAGTTTGCAAAACAAAGTCATTTAAAGCAATTTAAAAACATAATTTTAAAGGTGCAAAGTTTTCTTGTATTTTCATTTTTAGATGATGTTTCAACTTCAGAAAAGCTAATAAATCAACTTTTTAAAAAGCTACTGCTATTCAGGTGTAATAAAGTTAATTTTTTATAATTGTAGCTAATTATAAATATTGTTATTACAAAACAAATAAATACATTTTATTGCATTTGTATATACTCTGTAAAAATCATATATGATTAATTAGTCCTGACAGCATAGGCTTTTGAACTTATTAAAAGTTTATCATGCTCTACCTTAATTCTGTGTTACGCAAGCTGTTTTAAGTCAGTTTAACATAAGTCCAATGGACTCATAAGGTTAATTTGATTCAACTTAAAAATGTAAGGCAAACAGGATTTTTTTTTTTACAGTGTACCAGTTTAGAGAATCATTTCATTAATTTACATTTCAGTAGAGACGCTTGTGTTGCTATGCATTTTAAAACTGGATTTTCTTTAAGTTAGTTCACTTATTTTACTGTTGCTGAGGTCTCTCGTCCAGCTCAGCTGATTGGCCTTGCAGCGTCTTGACGCATTTCAAGAAGTGCAGTCTGGGGTGCTTGAAGAGAACAAAAGACTGTTGCGTTTAGCATTGCATTTTTGGCAGAGCTCTGCAGCACTCACTTCTGCAGAGACATGCTGAGTCAGCGTGCCTAATTCATTTCCCCGCCGTATCAATGAGGGTGAATGTAGTGCTCTAATTGCGCTCCATTCATTAGCAGAAATATCTTTGGCAGAGGAGTAGATTAATGAATATTGCCATTTTATTTCCCAG
Seq C2 exon
ATTTTCAGTCTAGACCTGGGAGGAATCCCGACTGTGATTCTAAATGGTTATGATGCCATTAAAGAGTGCCTGTATCACCAAAGTGAGGTTTTTGCAGACCGCCCGTCCCTCCCTTTATTCCAGAAGATGACAAAAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056587:ENSDART00000079091:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(7.0=40.0)
A:
NA
C2:
PF0006717=p450=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTTAACATCACCGCTCTC
R:
TGGAATAAAGGGAGGGACGGG
Band lengths:
348-1591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]