HsaALTD1040296-1/4 @ hg38
Alternative 5'ss
Gene
ENSG00000186104 | CYP2R1
Description
cytochrome P450 family 2 subfamily R member 1 [Source:HGNC Symbol;Acc:HGNC:20580]
Coordinates
chr11:14885776-14891492:-
Coord C1 exon
chr11:14891364-14891492
Coord A exon
NA
Coord C2 exon
chr11:14885776-14885917
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
TTTTTCTTCTCTTCTCAAAGATC
3' ss Score
8.8
Exon sequences
Seq C1 exon
GGCGTTTGCTGTGAGAATGGAGAATGCAGGGGAACGCCCCTGACTGAGAAGCGGGCCCTGGGAAACGATTGTGAACGCGTGAATGAATTGATGACTAAAATCCGCTGCGGGGGTCCTACAGCGCAGATG
Seq A exon
NA
Seq C2 exon
ATCTTCAGTTTAGATCTTGGAGGCATATCAACTGTGGTTCTAAATGGCTATGATGTAGTAAAGGAATGCCTTGTTCATCAAAGCGAAATTTTTGCAGACAGACCATGCCTTCCTTTATTCATGAAGATGACAAAAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186104-1-12,2-12,3-12,4-12-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGTTTGCTGTGAGAATGGA
R:
CTCCCATTTTTGTCATCTTCATGA
Band lengths:
271-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains