HsaEX1010870 @ hg38
Exon Skipping
Gene
ENSG00000186104 | CYP2R1
Description
cytochrome P450 family 2 subfamily R member 1 [Source:HGNC Symbol;Acc:HGNC:20580]
Coordinates
chr11:14885776-14892252:-
Coord C1 exon
chr11:14891981-14892252
Coord A exon
chr11:14890900-14891051
Coord C2 exon
chr11:14885776-14885917
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTATTTATATGCAACTACAGGCC
3' ss Score
5.42
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
CCTGGGTCTCAGGGCTGCTGTGGAGTTCGCACCTCCAGCTCGGGCCGATGTGGAAGCTTTGGAGAGCTGAAGAGGGCGCGGCGGCGCTCGGCGGCGCGCTCTTCCTGCTGCTCTTCGCGCTAGGGGTCCGCCAGCTGCTGAAGCAGAGGCGGCCGATGGGCTTCCCCCCGGGGCCGCCGGGGCTGCCATTTATCGGCAACATCTATTCCCTGGCAGCCTCATCCGAGCTTCCCCATGTCTACATGAGAAAGCAGAGCCAGGTGTACGGAGAG
Seq A exon
GCCTGACGCTAGCGGTGAAGAAGGCAGATACAGCCTTTTAAGGAGTTGGCAGATGAGTGGGAGAGAGAAAACTAATCTCATTATCGGCCACAGGCTGTGGTCAGTGTTTTGAAGGAAAAGTACAGGGATGTTTGGCAACTGTGGTATTTCAG
Seq C2 exon
ATCTTCAGTTTAGATCTTGGAGGCATATCAACTGTGGTTCTAAATGGCTATGATGTAGTAAAGGAATGCCTTGTTCATCAAAGCGAAATTTTTGCAGACAGACCATGCCTTCCTTTATTCATGAAGATGACAAAAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186104_MULTIEX1-1/6=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.081
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(7.6=46.7)
A:
NO
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
ENST00000334636fB13364
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGAGAGCTGAAGAGGGC
R:
ACCACAGTTGATATGCCTCCA
Band lengths:
254-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains