HsaEX0018441 @ hg19
Exon Skipping
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:17294]
Coordinates
chr9:124499681-124519445:+
Coord C1 exon
chr9:124499681-124499994
Coord A exon
chr9:124505064-124505200
Coord C2 exon
chr9:124519292-124519445
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTCACCTTCCCCTAGTGT
3' ss Score
9.53
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTTGGAAGACACAGATTCAGCACGTGCCTTTCGGGAAGGGGAAGCCCTCCTAGGCTCACCTCTTAGATGCCGGCCCGGCCGAGAGGCCCCCTAATCTGTCCAGAAGAGCTGCCTGGGTGAGCACCACCCTTGGGAATGGGCCTCTGTGGCCTTGGACTTCTTAGTGACAACTTCGGCAAGATCCTGGGCCGGGCCGGAGGGGCTGCTCACTGGAGACCTGGCCATCTTCGGAAGCCAGATCTGGCTCCAGAGCCTCGGGGGTTGCAAGTGCCCAGAACCAGGTCAGCAGAGAGGCCTGCGCTCCCACCACAAAG
Seq A exon
TGTTCCTCTTCTTTCGTGTTGTGTCAGAAGCCATGATTTCCAGTCTTCTCATCTGGAAGATGAAGGAAAAGATAGACCCGACCCCACAGGGTTCTGAGGCTCAAACTGAAAGCCTGGTGGTGGGGCACCTGTGACAG
Seq C2 exon
GTCCCATCTGATGCCGAGGCTGAAGGAGTCTCGCTCCCACGAGTCCCTGCTCAGCCCCAGCAGTGCGGTGGAGGCGCTGGACCTCAGCATGGAGGAAGAGGTGGTCATCAAGCCCGTGCACAGCAGCATCCTTGGCCAGGACTACTGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848-'8-11,'8-7,9-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.246
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(57.5=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTCCAGAAGAGCTGCCT
R:
CTTCAGCCTCGGCATCAGATG
Band lengths:
246-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)