HsaEX0018443 @ hg19
Exon Skipping
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:17294]
Coordinates
chr9:124440957-124519445:+
Coord C1 exon
chr9:124440957-124441060
Coord A exon
chr9:124461604-124461737
Coord C2 exon
chr9:124519292-124519445
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCTTGTCCCCCCGTGCGCAGGGC
3' ss Score
10.42
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGTCGCCTCAAGAAAGGCCGGGCTCTCGGCGCAGCCTGCCTGGCAGCCTTTCCGAGAAGAGCCCCAGCATGGAGCCCTCGGCCGCCACGCCGTTCCGGGTCACG
Seq A exon
GGCTTCCTCAGCCGCCGCCTCAAGGGCTCCATCAAGCGCACCAAGAGCCAGCCCAAGCTGGACCGCAACCACAGCTTCCGCCACATCCTGCCGGGGTTCCGGAGCGCCGCCGCCGCCGCCGCGGACAATGAGAG
Seq C2 exon
GTCCCATCTGATGCCGAGGCTGAAGGAGTCTCGCTCCCACGAGTCCCTGCTCAGCCCCAGCAGTGCGGTGGAGGCGCTGGACCTCAGCATGGAGGAAGAGGTGGTCATCAAGCCCGTGCACAGCAGCATCCTTGGCCAGGACTACTGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848_MULTIEX1-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=0.683 C2=0.246
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(29.9=77.8)
C2:
PF0016924=PH=PU(57.5=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAAAGGCCGGGCTCTC
R:
GAAGCAGTAGTCCTGGCCAAG
Band lengths:
248-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)