MmuEX0013710 @ mm9
Exon Skipping
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled homolog 2 (Drosophila) interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35499408-35563321:+
Coord C1 exon
chr2:35499408-35499511
Coord A exon
chr2:35517012-35517145
Coord C2 exon
chr2:35563168-35563321
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCTTGTCGCCCCGCGCGCAGGGC
3' ss Score
7.71
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGTCGCCCCAAGAAAGGCCGGGCTCCCGGCGGAGCCTTCCCGGCAGCATGTCAGAGAAAAACCCCAGCATGGAGCCCTCGGCTTCAACCCCGTTCCGGGTCACG
Seq A exon
GGCTTCCTCAGCCGCCGCCTCAAGGGCTCCATCAAGCGCACCAAGAGCCAGCCCAAACTGGACCGCAACCACAGCTTCCGCCACATCCTGCCGGGGTTCCGGAGCGCAGCCGCCGCCGCCGCGGACAATGAGAG
Seq C2 exon
GTCCCATCTGATGCCAAGGCTGAAGGAGTCTCGGTCACACGAGTCCCTGCTCAGCCCCAGCAGCGCAGTGGAGGCCCTGGACCTCAGCATGGAGGAGGAGGTGATTATCAAGCCCGTTCACAGCAGCATCCTGGGTCAGGACTACTGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=0.576 C2=0.268
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(29.9=77.8)
C2:
PF0016924=PH=PU(61.7=96.2)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAAGGCCGGGCTCC
R:
TCGAAGCAGTAGTCCTGACCC
Band lengths:
249-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: