BtaEX0010654 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008232 | DAB2IP
Description
Bos taurus DAB2 interacting protein (DAB2IP), mRNA. [Source:RefSeq mRNA;Acc:NM_001144082]
Coordinates
chr11:92552316-92638760:+
Coord C1 exon
chr11:92552316-92552419
Coord A exon
chr11:92578307-92578452
Coord C2 exon
chr11:92638607-92638760
Length
146 bp
Sequences
Splice sites
3' ss Seq
NNNNNNNNNNNNNNNNGCAGGGC
3' ss Score
0
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGTCGCCCCAAGAAAGGCCGGGCTCCCGGCGCAGCCTGCCTGGCAGCCTCTCGGAGAAGAGCCCCAGCATGGAGCCCTCGGCCACCACGCCGTTCCGGGTCACG
Seq A exon
GGCTTCCTCAGCCGCCGCCTCAAGGGCTCCATCAAGCGCACCAAGAGCCAGCCCAAGCTGGACCGCAACCACAGCTTCCGCCACATCCTGCCGGGGTTCCGCAGCGCCGCCGCCGCCGCCGCCGCCTCCGCCGCGGACAATGAGAG
Seq C2 exon
GTCTCATCTGATGCCCAGGCTGAAAGAGTCTCGCTCCCACGAGTCCCTGCTCAGCCCCAGCAGCGCGGTGGAGGCGCTGGACCTCAGCATGGAGGAGGAGGTGGTCATCAAGCCCGTGCACAGCAGCATCCTGGGCCAGGACTATTGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008232_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.400 C2=0.288
Domain overlap (PFAM):
C1:
NA
A:
PF0016924=PH=PU(31.1=74.0)
C2:
PF0016924=PH=FE(42.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAAGGCCGGGCTCC
R:
CTCGAAGCAATAGTCCTGGCC
Band lengths:
250-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development