GgaEX0001619 @ galGal3
Exon Skipping
Gene
ENSGALG00000001419 | DAB2IP
Description
NA
Coordinates
chr17:9211684-9282781:+
Coord C1 exon
chr17:9211684-9211787
Coord A exon
chr17:9230922-9231040
Coord C2 exon
chr17:9282628-9282781
Length
119 bp
Sequences
Splice sites
3' ss Seq
ATTCTTGTCTCACCCCGCAGGGG
3' ss Score
10.65
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGTCCCCCCCCGAGAGGTGTGGGCAGAGGCGCAGTATGCCCAGCGGGGTCGCAGAGCGGAACCCCACCATGGAGCCTGCAGCCACAACGCCCTTCCGCGTCACG
Seq A exon
GGGTTCCTCAGCCGTCGGCTTAAAGGCTCCATCAAAAGGACAAAGAGCCAACCGAAGCTCGATAGGAACAGCAGCTTCCGGCACATCTTACCTGGCTTCAGGAGCGTGGACAATGAGAG
Seq C2 exon
ATCCCATCTAATGCCGAGGCTGAAAGAATCGCGCTCCCACGAGTCTCTGCTCAGTCCCAGTAGTGCTGTTGAGGCTTTGGATCTCAGCATGGAGGAAGAAGTGGTCATCAAGCCGGTCCACAGCAGCATCCTGGGACAAGACTACTGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419-'3-6,'3-3,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.200 C2=0.269
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(25.5=70.0)
C2:
PF0016924=PH=FE(46.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGGTGTGGGCAGAGG
R:
AGCAGTAGTCTTGTCCCAGGA
Band lengths:
243-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]