DreEX0025640 @ danRer10
Exon Skipping
Gene
ENSDARG00000069484 | dab2ipa
Description
DAB2 interacting protein a [Source:ZFIN;Acc:ZDB-GENE-081104-516]
Coordinates
chr8:12152008-12226816:-
Coord C1 exon
chr8:12226710-12226816
Coord A exon
chr8:12210667-12210785
Coord C2 exon
chr8:12152008-12152164
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGACTTCTTGTCCAGGGC
3' ss Score
8.94
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGTCACTCGCTGACAGGGTGGGCCGGCGGCGCAGTATGCCTGGCAGTACGGTGGACAAAACGGTGGTCGCTATGGATGCAGACACGTCAACACCTTTTAAAGTCACG
Seq A exon
GGCTTCTTGAGCCGCAGACTGAAGGGTTCCATTAAACGCACCAAAAGCCAGCCGAAGCTCGACCGACACAGCAGCTTCAGGAACATCTTACCGGGCTTCAAGAGCGCGGAGAATGACAG
Seq C2 exon
TAGATCCCATCTGATGCCGAGGCTGAAGGAATCACGGTCTCACGAGTCGTTGCTCAGCCCCAGCAGTGCAGTTGAAGCTCTAGATCTCAGTATGGAGGAGGAAGTGCTCATCAAACCCGTGCACAGCAGCATCCTGGGACAGGATTTCTGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069484-'1-3,'1-1,2-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.309 C2=0.302
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(26.5=75.0)
C2:
PF0016924=PH=FE(46.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCGCTGACAGGGTGGG
R:
CGAAGCAGAAATCCTGTCCCA
Band lengths:
258-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]