RnoEX0026136 @ rn6
Exon Skipping
Gene
ENSRNOG00000055226 | Dab2ip
Description
DAB2 interacting protein [Source:RGD Symbol;Acc:621686]
Coordinates
chr3:14973056-15037298:+
Coord C1 exon
chr3:14973056-14973159
Coord A exon
chr3:14990694-14990824
Coord C2 exon
chr3:15037145-15037298
Length
131 bp
Sequences
Splice sites
3' ss Seq
CTTGGCGCCCCATGGCGCAGGCT
3' ss Score
4.49
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGTCACCCCAAGAAAGGCCGGGCTCCCGGCGCAGCCTTCCCGGCAGCCTGTCAGAGAAAAGCCCCAGCATGGAGCCCTCGGCTGCAACCCCGTTCCGGGTCACG
Seq A exon
GCTTCCTCAGCGCCGCCTCAAGGCTCCATCAAGCGCACCAAGAGCCAGCCCAAACTGGACCGCAACCACAGCTTCCGCCACATCCTGCCGGGGTTCCGGAGCGCAGCCACCGCCGCCGCGGACAATGAGAG
Seq C2 exon
GTCCCATCTGATGCCAAGGCTGAAGGAATCTCGATCACACGAGTCCCTGCTCAGCCCCAGCAGCGCAGTGGAGGCCCTGGACCTCAGCATGGAGGAGGAGGTGCTTATCAAGCCTGTTCACAGCAGCATCCTGGGTCAGGACTACTGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055226_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.886 C2=0.423
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(3.8=14.3)
A:
PF0016924=PH=PU(32.8=85.1)
C2:
PF0016924=PH=FE(38.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCCCAAGAAAGGCCG
R:
TCGAAGCAGTAGTCCTGACCC
Band lengths:
256-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]