RnoEX6061786 @ rn6
Exon Skipping
Gene
ENSRNOG00000000483 | Syngap1
Description
synaptic Ras GTPase activating protein 1 [Source:RGD Symbol;Acc:621090]
Coordinates
chr20:5546577-5548783:+
Coord C1 exon
chr20:5546577-5546668
Coord A exon
chr20:5547037-5547158
Coord C2 exon
chr20:5548630-5548783
Length
122 bp
Sequences
Splice sites
3' ss Seq
ATTTCCCATTTGCTCCCCAGCAA
3' ss Score
6.93
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
AATACCACTTGGGTCGCTCGAGGAGGAAGAGTGTCCCCGGGGGGAAACAGTACAGCATGGAAGCCGCCCCCGCTGCGCCCTTCCGGCCCTCG
Seq A exon
CAAGGCTTCCTGAGCCGGAGGCTAAAAAGCTCCATCAAACGTACAAAGTCACAACCCAAACTTGACCGGACCAGCAGCTTTCGACAGATCCTGCCTCGCTTCCGAAGTGCTGACCATGACCG
Seq C2 exon
GGCCCGGCTGATGCAGAGCTTCAAGGAGTCTCACTCCCATGAGTCCCTGCTGAGTCCCAGCAGTGCTGCTGAGGCCCTGGAGCTCAACCTGGATGAAGACTCCATTATCAAGCCAGTACACAGCTCCATCCTGGGCCAGGAGTTCTGCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000483-'23-18,'23-16,24-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.774 A=0.341 C2=0.231
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(13.6=100)
A:
PF0016924=PH=FE(18.1=100)
C2:
PF0016924=PH=FE(23.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTTGGGTCGCTCGAGG
R:
CTCAAAGCAGAACTCCTGGCC
Band lengths:
242-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]