DreEX0008559 @ danRer10
Exon Skipping
Gene
ENSDARG00000063713 | SYNGAP1 (1 of 2)
Description
synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
Coordinates
chr19:254029-259004:+
Coord C1 exon
chr19:254029-254123
Coord A exon
chr19:258113-258234
Coord C2 exon
chr19:258851-259004
Length
122 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTTCACAGAGT
3' ss Score
9.6
5' ss Seq
GAGGTACGA
5' ss Score
8.65
Exon sequences
Seq C1 exon
AGCACGCTCGTGCTCGCAGGAAGAGCTTTGCCACGTCGCGGCAGAGAAGCATGGAAACTCCGCCCACTGCCCCTACACAGCCATTTCGACAGCCT
Seq A exon
AGTTTTCTCAGCCGCCGCTTGAAAGGATCAATTAAACGAGCAAAGAGTCAACCCAAACTCGACCGCACGGGAAGCTTCCGCCACATGATTCTCCCACGATTCCGCAGTGCTGACCAGGAGAG
Seq C2 exon
GACGCGTCTGATGCAGAGCTTTAAGGAGTCTCACTCTCATGAGTCTCTGCTGTCTCCGAGCAGCGCGGCCGAGGCTCTGGACCTCACGCTGGACGAGGACGCCATCATCAAACCCGTCCACTCCAGCATCCTCGGCCAGGAGTACTGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063713-'5-5,'5-3,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.732 C2=0.355
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(19.6=48.8)
C2:
PF0016924=PH=FE(50.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTGCTCGCAGGAAGAG
R:
CTCGAAGCAGTACTCCTGGCC
Band lengths:
243-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]