GgaEX1048329 @ galGal4
Exon Skipping
Gene
ENSGALG00000004323 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr8:6453798-6473398:-
Coord C1 exon
chr8:6473292-6473398
Coord A exon
chr8:6462163-6462272
Coord C2 exon
chr8:6453798-6453951
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGTATGACTTCTCATTCCAGGGC
3' ss Score
8.38
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGGTCCCGGCAGAGAGATCTCCTCGCAGACGGAGCATCTCTGGGACCAGCACATCTGAGAAAACCAACTCCATGGATGCTGCAAATACCTCTCCTTTCAAAGTATCG
Seq A exon
GGCTTCTTCAGTAAACGTCTGAAAGGGTCCATCAAGAGGACAAAGAGTCAGTCAAAGCTGGACAGGAACACAAGTTTCCGCCTCCCATCCCTCCGCAATGCTGATGACAG
Seq C2 exon
GTCACGTGGGCTGCCGAAGCTGAAGGAGTCCCGCTCTCATGAGTCCCTGCTGAGCCCCGGCAGCGCAGTGGAAGCCCTGGACCTTGGGGCAGAAGAAAAGGTCTTTGTAAAGCCACTGCACAGCAGCATCCTCGGACAGGACTTCTGCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004323-'19-10,'19-9,21-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=0.676 C2=0.308
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(15.6=100)
A:
PF0016924=PH=FE(16.0=100)
C2:
PF0016924=PH=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGAGATCTCCTCGCAGA
R:
CAAAGCAGAAGTCCTGTCCGA
Band lengths:
251-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]