HsaEX0052391 @ hg19
Exon Skipping
Gene
ENSG00000075391 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:9874]
Coordinates
chr1:178359235-178408710:+
Coord C1 exon
chr1:178359235-178359341
Coord A exon
chr1:178389646-178389755
Coord C2 exon
chr1:178408557-178408710
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCTTCTGCCTTTCCTTCTAGGGA
3' ss Score
12.81
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGGTACCAGCAGAAAGGTCCCCTCGTAGACGGAGTATCTCAGGGACCAGTACATCAGAGAAACCCAACTCCATGGACACTGCAAATACCTCACCCTTCAAAGTACCA
Seq A exon
GGATTCTTCAGCAAGCGCCTGAAAGGCTCCATCAAGAGGACCAAAAGCCAGTCAAAGCTTGACAGAAACACGAGCTTTCGGCTTCCATCCCTTCGCAGTACAGATGACAG
Seq C2 exon
GTCTCGTGGGCTGCCTAAACTAAAAGAGTCACGTTCCCATGAATCCTTGCTGAGCCCATGCAGCACAGTGGAATGTCTGGATCTTGGTAGAGGGGAACCTGTATCAGTGAAACCACTTCATAGTAGCATCCTTGGACAAGACTTCTGCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075391-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=0.676 C2=0.192
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(15.0=100)
A:
PF0016924=PH=FE(15.5=100)
C2:
PF0016924=PH=FE(21.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGGTCCCCTCGTAGACG
R:
AGCAGAAGTCTTGTCCAAGGA
Band lengths:
246-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)