DreEX0060984 @ danRer10
Exon Skipping
Gene
ENSDARG00000036257 | rasal2
Description
RAS protein activator like 2 [Source:ZFIN;Acc:ZDB-GENE-070912-180]
Coordinates
chr2:35836406-35853049:+
Coord C1 exon
chr2:35836406-35836515
Coord A exon
chr2:35843169-35843281
Coord C2 exon
chr2:35852896-35853049
Length
113 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCTTCTGCTTCACAGGGT
3' ss Score
9.59
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CGGAAGCGTCCGCGGAGCGCTCTCCCAGACGGAGGAGCATATCAGGGCTAGGCAGCTCAGAGAAGAACATTTCCATCGATGGCCCCAACTCATCTCCCTTCAAAGTGCCT
Seq A exon
GGTTTTTTAAGTAAACGACTGAAAGGATCCATCAAAAGGACGAAGAGCCAGACTAAGCTGGACCGCAACACAAGTTTCAGACTCCCATCGCTGCGACCAACAGAAAATGACAG
Seq C2 exon
GTCACGAGGCCTGCCCAAATTGAAGGAGTCCTGTTCCCATGAGTCTTTGCTGAGTCCTGGCAGCGCTGTTGAAGCTCTGGATCTGAGTATGGAGGAGGATGTCTACATCAAACCTTTACACAGCAGCATCCTAGGACAAGATTTCTGCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036257-'7-9,'7-7,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.804 A=0.678 C2=0.135
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(14.3=100)
A:
PF0016924=PH=FE(14.7=100)
C2:
PF0016924=PH=FE(20.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGACGGAGGAGCATATC
R:
CTCAAAGCAGAAATCTTGTCCTAGGA
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]