GgaEX1048329 @ galGal3
Exon Skipping
Gene
ENSGALG00000004323 | RASAL2
Description
NA
Coordinates
chr8:6779492-6799092:-
Coord C1 exon
chr8:6798986-6799092
Coord A exon
chr8:6787857-6787966
Coord C2 exon
chr8:6779492-6779645
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGTATGACTTCTCATTCCAGGGC
3' ss Score
8.38
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGGTCCCGGCAGAGAGATCTCCTCGCAGACGGAGCATCTCTGGGACCAGCACATCTGAGAAAACCAACTCCATGGATGCTGCAAATACCTCTCCTTTCAAAGTATCG
Seq A exon
GGCTTCTTCAGTAAACGTCTGAAAGGGTCCATCAAGAGGACAAAGAGTCAGTCAAAGCTGGACAGGAACACAAGTTTCCGCCTCCCATCCCTCCGCAATGCTGATGACAG
Seq C2 exon
GTCACGTGGGCTGCCGAAGCTGAAGGAGTCCCGCTCTCATGAGTCCCTGCTGAGCCCCGGCAGCGCAGTGGAAGCCCTGGACCTTGGGGCAGAAGAAAAGGTCTTTGTAAAGCCACTGCACAGCAGCATCCTCGGACAGGACTTCTGCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004323-'5-4,'5-3,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=0.676 C2=0.308
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(15.5=100)
A:
PF0016924=PH=FE(15.9=100)
C2:
PF0016924=PH=FE(22.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGAGATCTCCTCGCAGA
R:
CAAAGCAGAAGTCCTGTCCGA
Band lengths:
251-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]