MmuEX0038903 @ mm10
Exon Skipping
Gene
ENSMUSG00000070565 | Rasal2
Description
RAS protein activator like 2 [Source:MGI Symbol;Acc:MGI:2443881]
Coordinates
chr1:157179099-157230145:-
Coord C1 exon
chr1:157230039-157230145
Coord A exon
chr1:157192747-157192856
Coord C2 exon
chr1:157179099-157179252
Length
110 bp
Sequences
Splice sites
3' ss Seq
ACTCTGCCTTTTCATTCTAGGGA
3' ss Score
10.71
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGGTGCCAGCAGAAAGGTCCCCCCGCAGACGGAGCATCTCAGGGACCAGCACATCAGAGAAACCCAACTCCATGGACACTGCGAATACCTCTCCTTTTAAAGTACCA
Seq A exon
GGATTCTTCAGCAAGCGCCTGAAAGGTTCCATCAAGAGGACCAAAAGCCAGTCGAAGCTTGACAGAAACACAAGCTTTCGGCTTCCATCCCTTCGCAATGCAGATGACAG
Seq C2 exon
GTCTCGAGGTCTGCCTAAACTGAAAGAGTCGCGTTCCCATGAGTCCCTGCTGAGCCCATGCAGTGCAGTGGAGTGTCTGGATCTAGGTAGAGGAGAGCCAGTCTCAGTGAAGCCACTGCACAGTAGCATCCTCGGACAGGACTTCTGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070565_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.873 A=0.639 C2=0.202
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(15.2=100)
A:
PF0016924=PH=FE(15.6=100)
C2:
PF0016924=PH=FE(22.1=100)
Main Skipping Isoform:
ENSMUST00000078308fB3362
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAGCAGAAAGGTCCC
R:
TCCTGTCCGAGGATGCTACTG
Band lengths:
246-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types