RnoEX0074226 @ rn6
Exon Skipping
Gene
ENSRNOG00000004917 | Rasal2
Description
RAS protein activator like 2 [Source:RGD Symbol;Acc:1307566]
Coordinates
chr13:74815565-74861166:-
Coord C1 exon
chr13:74861060-74861166
Coord A exon
chr13:74829110-74829219
Coord C2 exon
chr13:74815565-74815718
Length
110 bp
Sequences
Splice sites
3' ss Seq
GCTCTGCCTTTTCATTCTAGGGC
3' ss Score
10.56
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGGTACCAGCAGAAAGGTCCCCCCGCAGACGGAGCATCTCAGGGACCAGCACATCAGAGAAACCCAACTCCATGGACACTGCGAATACCTCTCCTTTTAAAGTACCA
Seq A exon
GGCTTCTTCAGCAAGCGCCTGAAAGGTTCCATCAAGAGGACCAAAAGCCAGTCGAAGCTTGACAGAAACACAAGCTTTCGACTTCCATCCCTCCGCAATGCAGACGACAG
Seq C2 exon
GTCTCGTGGTCTGCCTAAACTGAAGGAGTCACGTTCCCATGAGTCCCTGCTGAGCCCATGCAGTGCGGTGGAGTGTTTGGATCTTGGGAGAGGAGAGCCGGTCTCAGTGAAGCCACTGCACAGTAGCATCCTTGGACAAGACTTCTGCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004917_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=0.568 C2=0.183
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(15.2=100)
A:
PF0016924=PH=PU(30.5=97.3)
C2:
PF0016924=PH=FE(43.2=100)
Main Skipping Isoform:
ENSRNOT00000089062fB12183
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTACCAGCAGAAAGGTCCC
R:
CCAAGGATGCTACTGTGCAGT
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]