BtaEX0029757 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015537 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr16:61215816-61277176:+
Coord C1 exon
chr16:61215816-61215922
Coord A exon
chr16:61254949-61255058
Coord C2 exon
chr16:61277023-61277176
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTTCTGCCTTTTCATTCTAGGGG
3' ss Score
10.9
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AGGTGCCAGCAGAAAGGTCCCCACGCAGACGGAGTATCTCAGGGACCACTACATCTGAGAAACCCAACTCTATGGACACTGCGAATACCTCACCCTTCAAAGTACCA
Seq A exon
GGGTTCTTCAGCAAGCGCCTAAAAGGCTCCATCAAGAGGACCAAAAGCCAGTCAAAGCTTGACCGAAACACGAGCTTTCGGCTTCCCTCTCTTCGCAATACCGATGACAG
Seq C2 exon
GTCTCGTGGGCTGCCTAAACTAAAAGAGTCCCGTTCTCATGAATCTTTGCTGAGCCCATGCAGTGCCGTGGAATGTCTGGATCTCGGTAGAGGGGAGCCTGTGTCGGTAAAGCCACTCCATAGCAGCATCCTTGGACAAGACTTCTGCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015537-'7-10,'7-7,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.459 C2=0.192
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(30.5=97.3)
C2:
PF0016924=PH=FE(43.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAGCAGAAAGGTCCC
R:
GTCTTGTCCAAGGATGCTGCT
Band lengths:
247-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development