HsaEX0018444 @ hg19
Exon Skipping
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:17294]
Coordinates
chr9:124461604-124519445:+
Coord C1 exon
chr9:124461604-124461737
Coord A exon
chr9:124499681-124499994
Coord C2 exon
chr9:124519292-124519445
Length
314 bp
Sequences
Splice sites
3' ss Seq
AGTCATTTTTGAAATTTCAGCTT
3' ss Score
3.38
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GGCTTCCTCAGCCGCCGCCTCAAGGGCTCCATCAAGCGCACCAAGAGCCAGCCCAAGCTGGACCGCAACCACAGCTTCCGCCACATCCTGCCGGGGTTCCGGAGCGCCGCCGCCGCCGCCGCGGACAATGAGAG
Seq A exon
CTTGGAAGACACAGATTCAGCACGTGCCTTTCGGGAAGGGGAAGCCCTCCTAGGCTCACCTCTTAGATGCCGGCCCGGCCGAGAGGCCCCCTAATCTGTCCAGAAGAGCTGCCTGGGTGAGCACCACCCTTGGGAATGGGCCTCTGTGGCCTTGGACTTCTTAGTGACAACTTCGGCAAGATCCTGGGCCGGGCCGGAGGGGCTGCTCACTGGAGACCTGGCCATCTTCGGAAGCCAGATCTGGCTCCAGAGCCTCGGGGGTTGCAAGTGCCCAGAACCAGGTCAGCAGAGAGGCCTGCGCTCCCACCACAAAG
Seq C2 exon
GTCCCATCTGATGCCGAGGCTGAAGGAGTCTCGCTCCCACGAGTCCCTGCTCAGCCCCAGCAGTGCGGTGGAGGCGCTGGACCTCAGCATGGAGGAAGAGGTGGTCATCAAGCCCGTGCACAGCAGCATCCTTGGCCAGGACTACTGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.683 A=1.000 C2=0.246
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(29.9=77.8)
A:
NO
C2:
PF0016924=PH=PU(57.5=87.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGGGCTCCATCAAGCG
R:
CTCGAAGCAGTAGTCCTGGCC
Band lengths:
270-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)