HsaEX0025401 @ hg19
Exon Skipping
Gene
ENSG00000104870 | FCGRT
Description
Fc fragment of IgG, receptor, transporter, alpha [Source:HGNC Symbol;Acc:3621]
Coordinates
chr19:50015536-50017390:+
Coord C1 exon
chr19:50015536-50016007
Coord A exon
chr19:50016644-50016730
Coord C2 exon
chr19:50017139-50017390
Length
87 bp
Sequences
Splice sites
3' ss Seq
CGTGCCCCCTCCCGCCCCAGGTC
3' ss Score
11.25
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAAGGATATTAAAGAGCACCTGCAGGAATTTTTTAAGGGGATGCCGGGGGAAGGGCTTGAAGGAGGAACTAAGGAGGCTTCCAGAAGATTTTGATTAACAGCGAGCGCTAGGGAAGGCCACGGGGATACAGAGGGGTAGGAGGAGGATCCAGAGACCTCCAAGTTGTGGACTCCGGAGGCATCGAGTTCCTTTCCCAGTTTTGTCAAGAATTCCCTGAGCGGCAGACACCCTCAAAGTAAAAAACGGGAACCACAGAGAAGGAAAAAGAAGAACCACAAGCGTTTTGAGAAACAAACAGGCTGGGCCTAGGGCCTGGGGTGTGCCCTGCAACTGGGGGGTGGGGCTGGATGTTCTTGGAGTCAGGGAGCAGCAGCCTCCCACAGGATGTGAGAGAGGAACTGGGGTCTCCAGTCACGGGAGCCAGGAGCCGGCCAGGGCCGCAGGCAGGAAGGGAGCGAGGCTGAAGGGAAC
Seq A exon
GTCGTCCTCTCAGCATGGGGGTCCCGCGGCCTCAGCCCTGGGCGCTGGGGCTCCTGCTCTTTCTCCTTCCTGGGAGCCTGGGCGCAG
Seq C2 exon
AAAGCCACCTCTCCCTCCTGTACCACCTTACCGCGGTGTCCTCGCCTGCCCCGGGGACTCCTGCCTTCTGGGTGTCCGGCTGGCTGGGCCCGCAGCAGTACCTGAGCTACAATAGCCTGCGGGGCGAGGCGGAGCCCTGTGGAGCTTGGGTCTGGGAAAACCAGGTGTCCTGGTATTGGGAGAAAGAGACCACAGATCTGAGGATCAAGGAGAAGCTCTTTCTGGAAGCTTTCAAAGCTTTGGGGGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104870-'0-5,'0-3,2-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show PDB structure
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0012913=MHC_I=PU(48.3=97.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGCTGGATGTTCTTGG
R:
CGGTAAGGTGGTACAGGAGGG
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)