RnoEX0035536 @ rn6
Exon Skipping
Gene
ENSRNOG00000020583 | Fcgrt
Description
Fc fragment of IgG receptor and transporter [Source:RGD Symbol;Acc:61811]
Coordinates
chr1:101094721-101098457:-
Coord C1 exon
chr1:101096048-101098457
Coord A exon
chr1:101095323-101095592
Coord C2 exon
chr1:101094721-101094978
Length
270 bp
Sequences
Splice sites
3' ss Seq
ACAAATTTTGGTCTGTCTAGTTC
3' ss Score
4.94
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
TGTCTGTGTGTCTTTCCTGACAAGATCTTGGGTTGGGTGGCAGGGTAGGAGATGGGGCCTGAGACGAGGACTCTAGTCACAGAGTGTGTAGGCAGGGTTGGGACCACCTCACTCAAGTGCTGGTCACAGAGCGGGTTTACTGCTGAGAGTGGGCTGCAGCCAGGCCTTTCGTGTTAGGCAGTTATGCCATGACTGAGCCACACCCACAGCCCACAAATCCCGAGGTGTCTTAAAGCCACATTCAGTGCCCAGGCCTTTCCAGTACTGTGAGACTACTCTGAAAATGCTCAGAATGAGTAAACACAGAAACTGCTTTGGGAGGCAGGCCGAATGACGACTGCCCCAGGAGGCTTCCAGAGAGGTTGGACAGAGGCCCAGGGGTGTGCTTAAGAGCTCGTGGGTGGAGCTGGATTCCCTCAGAGTTCCACAGTCCTAACTGTGTACAGACAGGATGTAAGAAAAGAACTAGAGGCTCCGAGCAGAGGATCCATCGGCTGCAG
Seq A exon
TTCTGTAATTAATTAACTAACGTGGATCAAATGAGAAGGTGAAAGTTCACACAGGAGCACTCCTGTCGTCTTGGACTGGGTCTCCATCCCACCATCCAGTGCCCTGGTCTACGAAGAGTCCACAGGGACCTTGTGAAGAATCAACAAGGCGGGGTCCAGAGGAGTCACGTGTGCCTTCCACTCCGGGTCGCCCTGTCAGGATGGGGATGTCCCAGCCCGGGGTCCTCCTCAGCCTCTTATTGGTCCTCCTGCCTCAGACCTGGGGAGCGG
Seq C2 exon
AGCCCCGTCTCCCACTGATGTATCATCTTGCAGCTGTGTCTGACTTATCAACGGGGCTTCCCTCTTTCTGGGCCACGGGCTGGCTGGGTGCTCAGCAATATCTGACCTACAACAACCTGCGGCAGGAGGCTGACCCCTGTGGGGCCTGGATATGGGAAAACCAGGTGTCTTGGTATTGGGAGAAGGAGACCACGGATCTGAAAAGCAAAGAACAGCTCTTCTTGGAGGCCATCAGGACCCTGGAGAACCAAATAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020583_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0012913=MHC_I=PU(48.9=97.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGGTGTCTTAAAGCCAC
R:
ATACATCAGTGGGAGACGGGG
Band lengths:
305-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]