MmuEX6010536 @ mm10
Exon Skipping
Gene
ENSMUSG00000003420 | Fcgrt
Description
Fc receptor, IgG, alpha chain transporter [Source:MGI Symbol;Acc:MGI:103017]
Coordinates
chr7:45102414-45103851:-
Coord C1 exon
chr7:45103640-45103851
Coord A exon
chr7:45103003-45103273
Coord C2 exon
chr7:45102414-45102671
Length
271 bp
Sequences
Splice sites
3' ss Seq
ACAAATTTTGGTCTGTCTAGCTC
3' ss Score
5.02
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGCTGGACAGAGGCCCAAGGGGTGTGCTTAGGAGCTAGTGGGTGGAGTTGGATGCCCTCAGAGTTCTCCAGTCCTAACTGTGTACAGACAGGATGTAAGAGAAGAACTGGAGGCTCTAAGCAGAGGATCCATCGGCTGCAGGCAGAGGGAAGAGGGCCTCTGTGAGGAACAGGCTGAGCGTCAGAGGAGGAGGCCCAGGCCTGGTTCTCTAG
Seq A exon
CTCTGTAATTAATTAACTAAAGTGGATCAAATGAGAAGGTGAAAGTTCACAGAGGAACACTCCTGTCTGTCGTCTTGGACTGGGTCTCCATCCCACCATCCAGCGTCCTGGTCTACGAAGAGTCCACAGGGACCTTGTGAAGAATCAACAAGGCGGGGTCCAGAGGAGTCACGTGTCCCTTCCACTCCGGGTCACCCTGTCGGAATGGGGATGCCACTGCCCTGGGCCCTCAGCCTCTTGTTGGTCCTCCTGCCTCAGACCTGGGGCTCAG
Seq C2 exon
AGACCCGCCCCCCACTGATGTATCATCTCACGGCTGTGTCAAACCCATCTACGGGGCTTCCCTCTTTCTGGGCTACAGGCTGGTTGGGTCCTCAGCAGTATCTGACCTACAACAGCCTGCGGCAGGAAGCTGACCCCTGTGGGGCCTGGATGTGGGAAAATCAGGTGTCTTGGTATTGGGAGAAGGAGACCACAGACCTCAAAAGCAAAGAACAGCTCTTCTTGGAGGCCCTCAAGACCCTGGAGAAGATATTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003420-'1-4,'1-0,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0012913=MHC_I=PU(10.8=69.6)
C2:
PF0012913=MHC_I=PU(48.9=97.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGCAGAGGATCCATCGGCT
R:
GTCTGTGGTCTCCTTCTCCCA
Band lengths:
293-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types