HsaEX0026915 @ hg19
Exon Skipping
Gene
ENSG00000144278 | GALNT13
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) [Source:HGNC Symbol;Acc:23242]
Coordinates
chr2:154728426-154801152:+
Coord C1 exon
chr2:154728426-154728816
Coord A exon
chr2:154757449-154757520
Coord C2 exon
chr2:154800907-154801152
Length
72 bp
Sequences
Splice sites
3' ss Seq
GATTTTTTCTTCCTCCACAGATG
3' ss Score
12.23
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGGAGAAGTGACCAGGCGGCGGCGGCTCTGCTGAGGTGACAACGTGCTAGCAGCCCTCGCTCGCTCTGGGCGCCTCCTCGGCCTCAGCGTCCGCTCTGGCCGCGCTCGAGGAGCCCTTCAGCCCGCCGCTGCGCTATGAAGGCCCCTCTCTGGGGCTGGCCGAGGCTGGAGCCGGCTCCCTCTGCTCGCGGGCAAGTGTGAAGAGAGAGGCGCGGGCGGGAGCCGGGGCTGCGCGCGGCGCTCGCGGGCCGGCGCGGGTTCCAGGTGAGCGCGGACTCGGCGAGCCCCGCACTCGGCGCGGCCGGCCGGCGCCTGCTGGGCTTGATCTGAGGCTGAATCCCGTGTGTGGACCGCCGTTCCCTCTTCGCGGGATCGTTGGCCAGGATAGCAG
Seq A exon
ATGCATTTTTGTAGAAGCATTTTGAGGATGAATGTTTGCAAATCATTTTGAAATTGCCAAGTGCCACATACA
Seq C2 exon
TGGAATGTATCCTGCTTTCATCTTGGAGTTCACCTGTGTGGCTTGGATTTATCACAGTAGCATTTGTCTTCAATCTGTGTGTTAACTAGAAATCAAGGAAAGACATGAGGAGATTTGTCTACTGCAAGGTGGTTCTAGCCACTTCGCTGATGTGGGTTCTTGTTGATGTCTTCTTACTGCTGTACTTCAGTGAATGTAACAAATGTGATGACAAGAAGGAGAGATCTCTGCTGCCTGCATTGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144278_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGTTGGCCAGGATAGCAG
R:
CCACATCAGCGAAGTGGCTAG
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)