HsaEX0026915 @ hg38
Exon Skipping
Gene
ENSG00000144278 | GALNT13
Description
polypeptide N-acetylgalactosaminyltransferase 13 [Source:HGNC Symbol;Acc:HGNC:23242]
Coordinates
chr2:153871913-153944639:+
Coord C1 exon
chr2:153871913-153872303
Coord A exon
chr2:153900936-153901007
Coord C2 exon
chr2:153944394-153944639
Length
72 bp
Sequences
Splice sites
3' ss Seq
GATTTTTTCTTCCTCCACAGATG
3' ss Score
12.23
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGGAGAAGTGACCAGGCGGCGGCGGCTCTGCTGAGGTGACAACGTGCTAGCAGCCCTCGCTCGCTCTGGGCGCCTCCTCGGCCTCAGCGTCCGCTCTGGCCGCGCTCGAGGAGCCCTTCAGCCCGCCGCTGCGCTATGAAGGCCCCTCTCTGGGGCTGGCCGAGGCTGGAGCCGGCTCCCTCTGCTCGCGGGCAAGTGTGAAGAGAGAGGCGCGGGCGGGAGCCGGGGCTGCGCGCGGCGCTCGCGGGCCGGCGCGGGTTCCAGGTGAGCGCGGACTCGGCGAGCCCCGCACTCGGCGCGGCCGGCCGGCGCCTGCTGGGCTTGATCTGAGGCTGAATCCCGTGTGTGGACCGCCGTTCCCTCTTCGCGGGATCGTTGGCCAGGATAGCAG
Seq A exon
ATGCATTTTTGTAGAAGCATTTTGAGGATGAATGTTTGCAAATCATTTTGAAATTGCCAAGTGCCACATACA
Seq C2 exon
TGGAATGTATCCTGCTTTCATCTTGGAGTTCACCTGTGTGGCTTGGATTTATCACAGTAGCATTTGTCTTCAATCTGTGTGTTAACTAGAAATCAAGGAAAGACATGAGGAGATTTGTCTACTGCAAGGTGGTTCTAGCCACTTCGCTGATGTGGGTTCTTGTTGATGTCTTCTTACTGCTGTACTTCAGTGAATGTAACAAATGTGATGACAAGAAGGAGAGATCTCTGCTGCCTGCATTGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144278-'1-7,'1-1,9-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGTTGGCCAGGATAGCAG
R:
CCACATCAGCGAAGTGGCTAG
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development