RnoEX0037597 @ rn6
Exon Skipping
Gene
ENSRNOG00000005335 | Galnt13
Description
polypeptide N-acetylgalactosaminyltransferase 13 [Source:RGD Symbol;Acc:735044]
Coordinates
chr3:39966817-40038575:+
Coord C1 exon
chr3:39966817-39967687
Coord A exon
chr3:40004821-40004891
Coord C2 exon
chr3:40038336-40038575
Length
71 bp
Sequences
Splice sites
3' ss Seq
GCATTTTTATTCCTTCACAGGTA
3' ss Score
10.47
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TCGGGTGCGCAGCGCCCCAGCCCGGGGAGGAGCGGGAGCCGGGCGGGAGGAGGACCGGGGTGCTGGTTACGTAAATGATCCTAGCCCAGTGACAGGCCTCCGGGCTGGGGCTGCGGGAGGGGGAGGGCCCGGCGGAGGGGGCGGGGGCCAAGTGACCAGGCGGTGGCGGCTCTGCCGAGGTGACAATGTGCTAGGAGCCCCGCTCCGTGTCTCCTGCGCCTCCTCGGCCTGGGCGCCTCCTGTCAGCGCTCTCGGAGCCTCGCGGCCGCCTGCCGCGCTATGAGGGAGCGTCTCCGGGGCTGGCCGAGGCCGGGGCCGCCTCGCTCTGCTCGCCGAGAAGTGTGAAGAGAGGCGCGGGCGGGAGCCCTGGCTGCGCGCGGCGGCGGCTCCAGGTGAGCGCGGATCTCAGAGCAGCCGGCCACTGACCCGTCTGGATCTAGGCAGCATCCCAAGCGGGGACCGCGGAGCTCTCTCCGAGGGATCAACAGCCACCATAGCAG
Seq A exon
GTATATTTTGTAGGAGTATTTTGAAGATGGATATTTTCAAATCATTTTGAAATAGTCAAACACCATATACA
Seq C2 exon
TGGGATGCATCTTGCTTTTGTCCTGGAGATCACCTCTGTGGCTTGGATTTATCTCAGGACCATTCGTCTTCAGTCTGCGTGTTAATTAGAAATCAAGCATGAGGAGACTCGTCTACTGCAAGGTGGTTCTGGCCACTTCGCTGATGTGGGTGCTTGTCGATGTCTTCTTACTGCTGTACTTCAGCGAGTGTAACAAGTGTGATGACAAGAAGGAGAGATCCCTGCTACCTGCGCTGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005335_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTCTCCGAGGGATCAAC
R:
GCCAGAACCACCTTGCAGTAG
Band lengths:
168-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]