HsaEX0027987 @ hg19
Exon Skipping
Gene
ENSG00000147533 | GOLGA7
Description
golgin A7 [Source:HGNC Symbol;Acc:24876]
Coordinates
chr8:41347915-41355180:+
Coord C1 exon
chr8:41347915-41348136
Coord A exon
chr8:41348352-41348484
Coord C2 exon
chr8:41355028-41355180
Length
133 bp
Sequences
Splice sites
3' ss Seq
GTGTTCCCCCGACCCCGCAGCGC
3' ss Score
9.3
5' ss Seq
CGGGTACGC
5' ss Score
8.33
Exon sequences
Seq C1 exon
GCGGAAGGCGGGGTCGGCCCTGGCCCCGCCCACATCATTTCCCTTCCTCGGCCCAGCCCCACAGCGCGCAGCTTCGGCAGGGTGGCTTTACGGCCGGAGGAGAGGGTGGGTCCCAGACCTGAGGTAGGAGGCCGAGCTGAGGGGCGGGGAAGAGGCTTTTTGCGGCAGGACGTAAGTGACGGCGAAGGCGGTGCGACAGCAGCTGGAGGGCAGAGGAGGCGG
Seq A exon
CGCGGGGTGTCCTGTCCTCGCCATGAGGCCGCAGCAGGCGCCGGTGTCCGGAAAGGTGTTCATTCAGCGAGACTACAGCAGTGGCACACGCTGCCAGTTCCAGACCAAGTTCCCTGCGGAGCTGGAGAACCGG
Seq C2 exon
ATTGATAGGCAGCAGTTTGAAGAAACAGTTCGAACTCTAAATAACCTTTATGCAGAAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGTTTGGCTTGTTTAACAGCATATACCATCTTCCTATGCATGGAAACTCATTATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147533_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF102564=Erf4=PU(22.8=70.3)
C2:
PF102564=Erf4=FE(43.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGGCAGGGTGGCTTTAC
R:
CTTCGAGATATGACTGGCCGC
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)