DmeEX6023473 @ dm6

Exon Skipping

Gene

Description

This gene is referred to in FlyBase by the symbol DmelCG5447 (FBgn0039427). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (2 unique). Gene sequence location is 3R:26452534..26454585. Its molecular function is described by: protein-cysteine S-palmitoyltransferase activity. It is involved in the biological process described with: Golgi to plasma membrane protein transport; peptidyl-L-cysteine S-palmitoylation; protein targeting to membrane. 8 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: fertile; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages.

Coordinates

chr3R:26452534-26453241:+

Coord C1 exon

chr3R:26452534-26452657

Coord A exon

chr3R:26452854-26453022

Coord C2 exon

chr3R:26453089-26453241

Length

169 bp

Sequences

Splice sites

3' ss Seq

GCCATTATCCGCCTTTTCAGCGA

3' ss Score

7.5

5' ss Seq

ATGGTGACT

5' ss Score

3.33

Exon sequences

Seq C1 exon

ATCTGGTAACACTTGGAGTTTGCAAACATTTATCTCTCGACCAATTTAAGGAATTTGAGGCAATTAGGGCATTCCTGTGAGCTTTTCCAGGCCAACTGCGATTACTTCAAGCCAAGACAAACAG

Seq A exon

CGACAACATGTCCCAAGGCGGTGGCACTACTCCAGCGGGCGGTAATCCCACAGCGCTCCAGGCGACCGGAGGGGGCGTGGTCTTCAGCAAGGTCTTCATCCAGCGCGATTACAGCGAGGGCACCTCCGTCAAGTTCCATACACGGCTGCCCGCTGAGCTGGAGGGCATG

Seq C2 exon

ATTGAAAGACACGTCTTCGAGGCCACCATCAATAGGCTAAACGAGTTCTACGCCGAGGCGGAGGAGGGATCCTGCGGCACCTATTGCGAGGGCTGCATTGGCTGCATCACGGCCTACTTGATCTATATGTGCTCCGAAACGCACTATGAAAAG

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0039427-'0-1,'0-0,1-1=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))

No structure available

Features