HsaEX0027989 @ hg38
Exon Skipping
Gene
ENSG00000155265 | GOLGA7B
Description
golgin A7 family member B [Source:HGNC Symbol;Acc:HGNC:31668]
Coordinates
chr10:97850239-97864082:+
Coord C1 exon
chr10:97850239-97850315
Coord A exon
chr10:97859458-97859583
Coord C2 exon
chr10:97863930-97864082
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCGCCCGCACGTCTCCTCAGGTC
3' ss Score
8.27
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
CGGGGTCAGCACCGCGGAGACCCCCCTCGCCCGGCCCCGCGACAGCCTCCGAGCGCCCCCGGATCATGGCCACCGAG
Seq A exon
GTCCACAATCTGCAGGAGCTCCGGCGAAGTGCCTCACTGGCCACCAAGGTCTTTATCCAGAGAGACTACAGCGATGGGACCATCTGTCAGTTCCAGACCAAATTCCCCCCAGAGCTGGACAGCCGG
Seq C2 exon
ATCGAGCGGCAGCTCTTTGAAGAGACTGTGAAGACCCTCAACGGATTTTACGCAGAGGCTGAGAAGATTGGGGGCAGCTCCTACCTCGAGGGCTGCCTGGCCTGCGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155265_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF102564=Erf4=PU(81.2=61.9),PF139001=GVQW=PU(5.3=2.4)
C2:
PF102564=Erf4=FE(43.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGCCCCCGGATCATG
R:
TCTCATAGTGGGTCTCCATGCA
Band lengths:
178-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development