MmuEX6032940 @ mm10
Exon Skipping
Gene
ENSMUSG00000042532 | Golga7b
Description
golgi autoantigen, golgin subfamily a, 7B [Source:MGI Symbol;Acc:MGI:1918396]
Coordinates
chr19:42255891-42266903:+
Coord C1 exon
chr19:42255891-42256183
Coord A exon
chr19:42263329-42263454
Coord C2 exon
chr19:42266751-42266903
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCCCCTGTTCATCTCCTCAGGTC
3' ss Score
11.67
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GAACCCTGGCAGCAGGCGATCGGGTGGTGAGGAGCCTCCGGCGCGGCCTCGCCTCCCCGGTCCGGCTCCCGCGTCAGCACCGTGGACAGCACGGACCACCTTTCAGGGACCCTCCGGTCGGCAGGAGCGCGCTTCAGGTTTCGGCGATCTCATCAGTACCGCGGACAGCGCCCAGGCCCTCGCTGGCCTCGGCCAGCCCACCGGCTCTTCCTATCAGCACCGCGGACAGCCCCCCTGAACCAGCCCAGCGACAGCCAAGGACTGGTCAGAACGCCCTGAAGATGGCCACTGAG
Seq A exon
GTCCACAATCTTCAGGAGCTCAGGCGAAGCGCTTCGCTGGCCACCAAGGTCTTTATCCAGAGAGACTACAGTGACGGCACCATCTGTCAGTTCCAGACCAAATTCCCGCCAGAGCTGGATAGCCGG
Seq C2 exon
ATTGAGCGGCAGCTCTTTGAGGAGACGGTGAAGACCCTCAATGGTTTTTATGCGGAGGCTGAGAAGATCGGGGGCAGCTCCTATCTGGAGGGCTGCCTGGCCTGCGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042532-'10-15,'10-8,14-15=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF102564=Erf4=PU(22.6=61.9)
C2:
PF102564=Erf4=FE(43.5=100)
Main Skipping Isoform:
ENSMUST00000122375fB10735
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCGGCTCTTCCTATCAG
R:
TAGTGGGTCTCCATGCAGAGG
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types