RnoEX0039218 @ rn6
Exon Skipping
Gene
ENSRNOG00000015051 | Golga7b
Description
golgin A7 family, member B [Source:RGD Symbol;Acc:1583839]
Coordinates
chr1:261502862-261512887:+
Coord C1 exon
chr1:261502862-261503145
Coord A exon
chr1:261509573-261509698
Coord C2 exon
chr1:261512735-261512887
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCCCCTGTTCATCTCCTTAGGTC
3' ss Score
11.89
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GAGCCCTGGCAGCAGGCGATCGAGCGGTGAGGAGCCTCGGGCGCGGCCTCGCCTCCCCGGCCCGGCTCCCGCGTCAGCACCGTGGACAGCGCAGACCCCCTCTCAGGGACCCCTCGGCTCGCAGGAACACTCTACGGGTTTCGGCGATCTCATCAGTACCGCGGACAGCGCCCAGGCCCCCGCTGGCCTTGACCGCTCTTCAAATCAGCACCGCGGACAGCCCCCCTGGACCAGCCCAGCAGCAGCCAAGGACTGGTCAGAACGCCCGGAAGATGGCCACTGAG
Seq A exon
GTCCACAACCTTCAGGAGCTCAGGCGAAGCGCTTCACTGGCCACCAAGGTCTTTATCCAGAGAGACTACAGTGACGGCACCGTCTGTCAGTTCCAGACCAAATTCCCACCAGAGCTGGATAGCCGG
Seq C2 exon
ATTGAGCGGCAGCTCTTCGAGGAGACTGTGAAGACCCTCAATGGTTTTTATGCGGAGGCCGAGAAGATTGGGGGCAGCTCCTACCTGGAGGGCTGCTTGGCCTGCGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015051-'5-5,'5-4,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF102564=Erf4=PU(22.6=61.9)
C2:
PF102564=Erf4=FE(43.5=100)
Main Skipping Isoform:
ENSRNOT00000020390fB6106
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTTGACCGCTCTTCAAAT
R:
TAGTGGGTCTCCATGCAGAGG
Band lengths:
246-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]