GgaEX1026982 @ galGal4
Exon Skipping
Gene
ENSGALG00000026745 | GOLGA7B
Description
golgin A7 family, member B [Source:HGNC Symbol;Acc:HGNC:31668]
Coordinates
chr6:21831733-21834081:-
Coord C1 exon
chr6:21832872-21834081
Coord A exon
chr6:21832194-21832319
Coord C2 exon
chr6:21831733-21831885
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACCCCACTGCCCCCCCCCAGGTA
3' ss Score
10.4
5' ss Seq
CGGGTAGGA
5' ss Score
7.22
Exon sequences
Seq C1 exon
TCTCTGATGTCTGCCTGCGCTGTGCTTGCAGCACCCGCTCTGCAGCTGCAAATTCTGCACGAGAAGCACTCAGCCACCTACCCGGGCAGGGCGGGCTGCCAGCCCCACGCCCAGCCCCCCCAGTACCCCCGTGTCCTTCCCACGGCATGCAGCCCCCCGTTACCCCCGCGCCCTCCATGCCGCAGCACCCCCCGGGGAGCCACTTCCCAGCCACCCCCACAGCCGCCCCCGATCGGTCCGGCTCCCCCCGGGCTCGGTGCAGGCAGCAGCGGGCGCCCATCCCCGGGGCCGGGCGGCTGCGCACAAGTTGCGGCCGGGCCCGCCTCCGCCTCCGCCGCGCGGCTCAGCAGCACCGCGGACAGCGCCGGTGCCGCCCGCTCGGTTCTGCCCGGCTCGGTTCGGCACGGCCCGGCCCCGCCGCCGGCTCCCGTTCACCCGCGCGGCCCGACCCAGCGCAGCACGGCCCGGCCCGGGGCGCACGGAGCGTCATGGCCACGGAG
Seq A exon
GTACACAGCCTGCAGGAGCTGAGGCGCAGCGCGTCCCTGGCCACCAAGGTCTTTGTGCAGCGGGACTACAGTGATGGGACCACGTGCCAGTTCCAGACTAAGTTCCCCCCGGAGCTGGAGAGCCGG
Seq C2 exon
ATTGAGCGTCAGCTGTTCGAGGAGACCGTGAAAACTCTCAATGGGTTCTATGCTGAAGCAGAGAAGATCGGGGGCAGCTCATACCTGGAGGGGTGCCTGGCCTGTGCCACTGCCTACTTCATCTTCCTCTGCATGGAGACGCACTACGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026745-'1-1,'1-0,2-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF102564=Erf4=PU(22.6=61.9)
C2:
PF102564=Erf4=FE(43.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCCCGGCTCGGTTC
R:
AGATGAAGTAGGCAGTGGCAC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]