DreEX0035506 @ danRer10
Exon Skipping
Gene
ENSDARG00000105099 | golga7bb
Description
golgin A7 family, member Bb [Source:ZFIN;Acc:ZDB-GENE-090312-173]
Coordinates
chr13:39893111-39915500:+
Coord C1 exon
chr13:39893111-39893353
Coord A exon
chr13:39911270-39911395
Coord C2 exon
chr13:39915348-39915500
Length
126 bp
Sequences
Splice sites
3' ss Seq
CGTTTTGTGTCTTTCTGCAGTTC
3' ss Score
10.41
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
CTTTTTAACCTCGTTGTTTAAGTGTTAATCAGGTGCTCCTGCTCCCCCTTTCTCAGAAGATGCATGTACAATCCTGAAGTGAAGCACAACTGTTGTAGTCACTCCTCCTCCGTCAGCGGGAGTCGGATGCTGCTCCACCCTCTCCAGCGCCTTCATCTCACCGTCCGTTCTCTGTCCCGCGAGTGGAGAGGATTTCAGCACCGGGACAGATCCTTCACCGTCTCAGGCATCATGGGGACAGAG
Seq A exon
TTCCACAACCTTCAGGAGCTGCGTCACACTGCGTCTCTGGCCACCAAGGTCTTCATTCAGAGAGATTACAGTGATGGCACCATCTGCAAATTCCAGACCAAGTTCCCCACAGAGCTGGACAGCAGG
Seq C2 exon
ATCGAGAGGAGCCTGTTTGAAGAAACAGTGAAGACGCTCAACTGCTATTACGCCGAGGCAGAAAAGATCAGCGGTCAGTCCTATCTGGAAAGCTGCCTGGCTTGTGCTACGGCCTACTTCATCTTCCTGTGCATGGAGACACGCTATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105099-'0-2,'0-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF102564=Erf4=PU(22.6=61.9)
C2:
PF102564=Erf4=FE(43.5=100)
Main Skipping Isoform:
ENSDART00000158820fB2979
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCCCCTTTCTCAGAAGA
R:
GGCGTAATAGCAGTTGAGCGT
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]