BtaEX6100108 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008100 | GOLGA7B
Description
Bos taurus golgin A7 family, member B (GOLGA7B), mRNA. [Source:RefSeq mRNA;Acc:NM_001076954]
Coordinates
chr26:18858709-18868164:+
Coord C1 exon
chr26:18858709-18858837
Coord A exon
chr26:18866378-18866503
Coord C2 exon
chr26:18868012-18868164
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCTCCCGATCAATTCCCAAGGTC
3' ss Score
5.16
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
CAGCGCTCGGGCCCGGGTCTCGTCGCTGTCAACCCACCTGCTCCCTGAGTCAGCAGCGCCAACATCCCTCCTCGACGGGCCCCGCAGCGGGCTCGGAGCAGTCAGCGCCCCCGGAACATGGCCACTGAG
Seq A exon
GTCCACAATCTGCAGGAGCTCCGGCGAAGTGCCTCGCTGGCCACCAAGGTCTTTATCCAGAGAGACTACAGCGATGGGACCATCTGCCAGTTCCAGACCAAGTTCCCCCCAGAGCTGGACAGTCGG
Seq C2 exon
ATCGAGCGGCAGCTCTTTGAGGAGACCGTGAAGACCCTCAACAGCTTCTACGCGGAGGCCGAGAAGATTGGGGGCAGCTCTTACCTCGAGGGCTGCCTGGCCTGTGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008100-'0-3,'0-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF102564=Erf4=PU(22.6=61.9)
C2:
PF102564=Erf4=FE(43.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTGCTCCCTGAGTCAG
R:
TAGTGGGTCTCCATGCAGAGG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]