DreEX0035504 @ danRer10
Exon Skipping
Gene
ENSDARG00000036295 | golga7ba
Description
golgin A7 family, member Ba [Source:ZFIN;Acc:ZDB-GENE-050417-14]
Coordinates
chr1:54231244-54249556:+
Coord C1 exon
chr1:54231244-54231550
Coord A exon
chr1:54246313-54246438
Coord C2 exon
chr1:54249404-54249556
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCCCTCCTCTGCAGTTC
3' ss Score
10.65
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TGGTTACCTTCTCAGCTGAACACAGCTTCTCTCCCTGAGCGTCCACTACTGAGCTTTGACTCGTCTGTATTATAATACTTGTGCTTTAAAAACATAAATCCTCATCACAACATTACTTCACATGACTGAAGCCGTTGGAATCTGCGCGGCTTCGGTTACCCCTCCCCCCGCGCGTCAGAACATTGTGTGATTGTTTCCGGCCCCGCCCCCTCTCCGTTTATCCCCACGTCCAAACGTTTATTCCCGTGAACCCGTTTCAGCACCCGGGACAGGCGTCGCGTGCTCGCATGGCAACATGGCCACAGAG
Seq A exon
TTCCACAACCTTCAGGAACTGAGACACAGCGCATCTCTGGCCAACAAGGTCTTCATTCAGAGAGACTACACCGATGGCACGGTCTGCAAGTTCCAGACCAAGTTCCCCTCCGAGTTAGACAGCAGG
Seq C2 exon
ATCGAGCGGACGCTGTTTGAGGACACGGTGAAGACGCTGAATACTTACTATGCAGAGGCGGAGAAGATCGGAGGCCAGTCTTACATAGAAGGATGTCTGGCCTGCCTTACAGTTTACCTCATCTTCCTGTGCATCGAGACGCGTTACGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036295-'0-2,'0-1,5-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF054786=Prominin=PU(46.1=97.6),PF102564=Erf4=PU(22.6=61.9)
C2:
PF054786=Prominin=PD(51.7=90.2),PF102564=Erf4=FE(43.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGACTGAAGCCGTTGGA
R:
TCTTCTCCGCCTCTGCATAGT
Band lengths:
256-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]