DreEX0035501 @ danRer10
Exon Skipping
Gene
ENSDARG00000057676 | golga7
Description
golgin A7 [Source:ZFIN;Acc:ZDB-GENE-040625-142]
Coordinates
chr10:20406774-20411350:+
Coord C1 exon
chr10:20406774-20407054
Coord A exon
chr10:20407819-20407941
Coord C2 exon
chr10:20411198-20411350
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTATTTCTGTCTCTCTCCAGACG
3' ss Score
12.03
5' ss Seq
AGGGTGTGT
5' ss Score
4.51
Exon sequences
Seq C1 exon
TTAGAACAGCAATGCTGTCTATGCTTGCAAAAGGCTAACGAAATGTACATTTAAAAAAGGATCACTCATTTGATTAATAATAGTCCTACCCAAGCTACTAAACTAAAAGTTTAATTGCAATCTAGAACAAATTTACCAATGCGATGAACAAATGGCTACAGTTTGGAATTGACCAAGCATCGGAACTAATAAATAAATGTAAAAGTTCCTACCGGACTGTGTTTTGAGGAGGACGAGGAGTCTGAATAACAGGAAGAGGAGAAGCAGCCACTATGGCGGAG
Seq A exon
ACGCACAGCTTGCAGGACCTGCGGCAAGCAGCCGTCGCCTCCAAGGTTTTCGTTCAGAGAGATTACACCAGTGGCACCATCTGCAAGTTTCAGACCAAGTTCCCAGCCGAACTGGAGAGCAGG
Seq C2 exon
ATTGACAAGGTGCAGTTTGAGGAAACCATACAGACCCTGAATAATCTCTATGCAGAAGCAGAGAAGCTGGGCGGCAGGTCGTACCTGGAGGGCTGTTTGGCCTGTCTCACTGCGTACACAATCTTCCTCTGCATGGAAACACACTATGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057676-'0-3,'0-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF102564=Erf4=PU(22.6=63.4),PF130581=DUF3920=PU(15.7=31.7)
C2:
PF102564=Erf4=FE(43.5=100),PF130581=DUF3920=FE(60.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATTGACCAAGCATCGGA
R:
GCAGAGGAAGATTGTGTACGCA
Band lengths:
250-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]