HsaEX0028228 @ hg19
Exon Skipping
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:17830]
Coordinates
chr9:132854527-132869818:+
Coord C1 exon
chr9:132854527-132854660
Coord A exon
chr9:132862908-132862981
Coord C2 exon
chr9:132869775-132869818
Length
74 bp
Sequences
Splice sites
3' ss Seq
ATGCAGTTGTTTGATTTCAGATT
3' ss Score
5.26
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
ATTGAGATCACAGAGAAGAATCCTGACAGCTACCTCTCAGCAGGAGAAATTCCTCTCCCCAAATTATACATCTCAATGGCCTTTTTCTTCTTTCTTTCTGGGACCATCTGGATTCATATCCTTCGAAAACGACG
Seq A exon
ATTGACTACCACTACATCTCCTCCCAGGGCTTCCCTATCGAAGGCTGGGCTGTTGTGTACTACATAACTCACCT
Seq C2 exon
GTCAATCAGACATTTACAAGAAGCATCAGCAACAGATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(15.1=100)
A:
PF068148=Lung_7-TM_R=FE(10.7=100)
C2:
PF068148=Lung_7-TM_R=FE(5.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGAGAAGAATCCTGACAGC
R:
TCCATCTGTTGCTGATGCTTCT
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)