MmuEX0021631 @ mm10
Exon Skipping
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31183580-31185606:+
Coord C1 exon
chr2:31183580-31183655
Coord A exon
chr2:31184798-31184871
Coord C2 exon
chr2:31185489-31185606
Length
74 bp
Sequences
Splice sites
3' ss Seq
ACACAGCTGTTTGCTTTCAGATC
3' ss Score
7.75
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GAATGATGTATTTAAAATTCACTGGTTGATGGCCGCCCTTCCTTTCACCAAGTCTCTCTCGTTGGTGTTCCATGCA
Seq A exon
ATCGACTACCACTACATCTCCTCGCAGGGCTTTCCGATTGAAGGCTGGGCTGTTGTATACTACATAACTCACCT
Seq C2 exon
GCTAAAGGGCGCACTCCTGTTCATCACCATCGCCCTCATCGGCACTGGCTGGGCCTTCATCAAGCACATCCTGTCTGATAAAGACAAGAAGATCTTCATGATTGTCATCCCGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(10.2=100)
A:
PF068148=Lung_7-TM_R=FE(8.2=100)
C2:
PF068148=Lung_7-TM_R=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCACTGGTTGATGGCCGC
R:
TGGAGCGGGATGACAATCATG
Band lengths:
178-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types