GgaEX1027205 @ galGal4
Exon Skipping
Gene
ENSGALG00000004052 | GPR107
Description
protein GPR107 precursor [Source:RefSeq peptide;Acc:NP_001025857]
Coordinates
chr17:5833634-5835438:+
Coord C1 exon
chr17:5833634-5833709
Coord A exon
chr17:5834696-5834769
Coord C2 exon
chr17:5835321-5835438
Length
74 bp
Sequences
Splice sites
3' ss Seq
ATTATGTTCTCTTCTTCCAGATC
3' ss Score
11.1
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
AAATGACGTCTTTAAGATTCACTGGCTAATGGCAGCCCTCCCTTTCACAAAATCGCTGTCCTTAGTCTTCCATGCA
Seq A exon
ATCGACTACCACTACATTTCTTCTCAGGGATTTCCTATTGAAGGCTGGGCTGTTGTCTATTACATCACTCACCT
Seq C2 exon
ATTTAAGGGTGCTCTTCTGTTCATCACTATTGCCCTCATTGGAACAGGCTGGGCTTTCATTAAACACATCCTTTCAGATAAAGACAAAAAAATTTTCATGATTGTCATCCCACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004052-'15-18,'15-17,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(8.6=100)
A:
PF068148=Lung_7-TM_R=FE(8.2=100)
C2:
PF068148=Lung_7-TM_R=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAATGGCAGCCCTCCCTTTC
R:
CTGAAGTGGGATGACAATCATGA
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]