DreEX0035791 @ danRer10
Exon Skipping
Gene
ENSDARG00000096651 | gpr108
Description
G protein-coupled receptor 108 [Source:ZFIN;Acc:ZDB-GENE-121214-129]
Coordinates
chr1:58369261-58370392:+
Coord C1 exon
chr1:58369261-58369397
Coord A exon
chr1:58370027-58370100
Coord C2 exon
chr1:58370275-58370392
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTCTTCCTCTCAGATC
3' ss Score
12.06
5' ss Seq
CTTGTGCGT
5' ss Score
3.56
Exon sequences
Seq C1 exon
CAGGTGAATATCACAGAGAGGAATCCTGAAGGTTACCTGTCTGCCACTGAGATTCCTCTGCCGCGTCTCTACATCTCCATGGCAGGAATCTTCTTCATGGCTGCGGTGGTGTGGACATACACACTGCTGAAACACAG
Seq A exon
ATCAACTATTACTTCATTAACTCTGATGGTTACCCGATTGAAGGATTGGCTGTCATGTACTACATCACACACTT
Seq C2 exon
GCTGAAAGGTGCTCTGCTGTTCATCACTCTGGCTCTCATCGGCACCGGCTTCGCCTTCGTTAAATACATCCTCTCAGACAAAGAGAAGAAGATCTTCATGATCGTCATCCCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096651_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=PU(17.1=97.8)
A:
PF068148=Lung_7-TM_R=FE(9.1=100)
C2:
PF068148=Lung_7-TM_R=FE(14.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCTTCATGGCTGCGGTG
R:
TGCAGAGGGATGACGATCATG
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]