HsaEX6092326 @ hg38
Exon Skipping
Gene
ENSG00000125734 | GPR108
Description
G protein-coupled receptor 108 [Source:HGNC Symbol;Acc:HGNC:17829]
Coordinates
chr19:6732263-6733062:-
Coord C1 exon
chr19:6732987-6733062
Coord A exon
chr19:6732476-6732549
Coord C2 exon
chr19:6732263-6732380
Length
74 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCCATCCACCCCCAGATC
3' ss Score
10.43
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GTACAGCGTCTTCAAGATCCACTGGCTCATGGCGGCCTTGGCCTTCACCAAGAGCATCTCTCTCCTCTTCCACAGC
Seq A exon
ATCAACTACTACTTCATCAACAGCCAGGGCCACCCCATCGAAGGCCTTGCCGTCATGTACTACATCGCACACCT
Seq C2 exon
GCTGAAGGGCGCCCTCCTCTTCATCACCATCGCCCTGATTGGCTCAGGCTGGGCCTTCATCAAGTACGTCCTGTCGGATAAGGAGAAGAAGGTCTTTGGGATCGTGATCCCCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125734-'25-21,'25-19,28-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(20.3=100)
A:
PF068148=Lung_7-TM_R=FE(15.7=100)
C2:
PF068148=Lung_7-TM_R=PU(22.9=96.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATCCACTGGCTCATGGC
R:
TCACGATCCCAAAGACCTTCT
Band lengths:
171-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains