RnoEX0039594 @ rn6
Exon Skipping
Gene
ENSRNOG00000046128 | Gpr108
Description
G protein-coupled receptor 108 [Source:RGD Symbol;Acc:735149]
Coordinates
chr9:9711726-9712451:+
Coord C1 exon
chr9:9711726-9711801
Coord A exon
chr9:9712159-9712232
Coord C2 exon
chr9:9712334-9712451
Length
74 bp
Sequences
Splice sites
3' ss Seq
ATACGTCTGCTGGCCTCCAGATC
3' ss Score
7.43
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GTACAGTGTCTTTAAGATCCACTGGCTCATGGCAGCCCTGGCGTTCACGAAGAGTGTCTCCCTACTCTTCCACAGC
Seq A exon
ATCAACTACTACTTCATCAACAGCCAGGGCCACCCCATCGAAGGCCTCGCCGTCATGCATTACATCACTCACCT
Seq C2 exon
GCTGAAGGGCGCCCTTCTCTTCATCACCATTGCCCTGATCGGCTCGGGCTGGGCCTTTGTGAAGTATATGCTGTCGGACAAGGAGAAGAAGATTTTTGGGATTGTGATTCCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046128_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(8.6=100)
A:
PF068148=Lung_7-TM_R=FE(8.3=100)
C2:
PF068148=Lung_7-TM_R=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATCCACTGGCTCATGGCA
R:
CTGCAGGGGAATCACAATCCC
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]